Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H2785_RS01590 Genome accession   NZ_CP059546
Coordinates   344218..344643 (+) Length   141 a.a.
NCBI ID   WP_223069842.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339218..349643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS01580 (H2785_01580) pilY1 339872..343726 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H2785_RS01585 (H2785_01585) pilY2 343739..344221 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  H2785_RS01590 (H2785_01590) pilE 344218..344643 (+) 426 WP_223069842.1 type IV pilin protein Machinery gene
  H2785_RS01595 (H2785_01595) rpsP 344790..345041 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H2785_RS01600 (H2785_01600) rimM 345061..345609 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H2785_RS01605 (H2785_01605) trmD 345655..346395 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H2785_RS01610 (H2785_01610) rplS 346603..346971 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H2785_RS01615 (H2785_01615) - 347023..347964 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H2785_RS01620 (H2785_01620) - 348079..349113 (-) 1035 WP_002062194.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15220.41 Da        Isoelectric Point: 7.8144

>NTDB_id=470348 H2785_RS01590 WP_223069842.1 344218..344643(+) (pilE) [Acinetobacter baumannii strain 10_4]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWVKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=470348 H2785_RS01590 WP_223069842.1 344218..344643(+) (pilE) [Acinetobacter baumannii strain 10_4]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTTGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATAGTAAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGTAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

96.454

100

0.965
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504