Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H2785_RS01575 Genome accession   NZ_CP059546
Coordinates   339042..339860 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 10_4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334042..344860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS01540 (H2785_01540) - 334624..334754 (-) 131 Protein_293 hypothetical protein -
  H2785_RS01545 (H2785_01545) rpoZ 334793..335071 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H2785_RS01550 (H2785_01550) gmk 335144..335773 (-) 630 WP_000015937.1 guanylate kinase -
  H2785_RS01555 (H2785_01555) ispH 335896..336846 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H2785_RS01560 (H2785_01560) fimU 337016..337489 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H2785_RS01565 (H2785_01565) pilV 337483..338043 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H2785_RS01570 (H2785_01570) pilW 338044..339045 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H2785_RS01575 (H2785_01575) pilX 339042..339860 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H2785_RS01580 (H2785_01580) pilY1 339872..343726 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H2785_RS01585 (H2785_01585) pilY2 343739..344221 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  H2785_RS01590 (H2785_01590) pilE 344218..344643 (+) 426 WP_223069842.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=470345 H2785_RS01575 WP_000149374.1 339042..339860(+) (pilX) [Acinetobacter baumannii strain 10_4]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=470345 H2785_RS01575 WP_000149374.1 339042..339860(+) (pilX) [Acinetobacter baumannii strain 10_4]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993