Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H2785_RS01505 Genome accession   NZ_CP059546
Coordinates   327275..327724 (+) Length   149 a.a.
NCBI ID   WP_020753494.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322275..332724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS01485 (H2785_01485) - 323667..324554 (+) 888 WP_223069836.1 metal-dependent hydrolase -
  H2785_RS01490 (H2785_01490) - 324685..325275 (+) 591 WP_000846931.1 LemA family protein -
  H2785_RS01495 (H2785_01495) - 325297..326379 (+) 1083 WP_223069838.1 TPM domain-containing protein -
  H2785_RS01500 (H2785_01500) - 326373..326933 (+) 561 WP_020753495.1 TPM domain-containing protein -
  H2785_RS01505 (H2785_01505) pilA 327275..327724 (+) 450 WP_020753494.1 pilin Machinery gene
  H2785_RS01510 (H2785_01510) - 327775..329085 (+) 1311 WP_031963616.1 O-antigen ligase family protein -
  H2785_RS01515 (H2785_01515) - 329192..330820 (+) 1629 WP_223069839.1 PglL family O-oligosaccharyltransferase -
  H2785_RS01520 (H2785_01520) bfr 330862..331326 (-) 465 WP_000678123.1 bacterioferritin -
  H2785_RS01525 (H2785_01525) - 331571..331765 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  H2785_RS01530 (H2785_01530) - 331975..332358 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15140.23 Da        Isoelectric Point: 8.4527

>NTDB_id=470341 H2785_RS01505 WP_020753494.1 327275..327724(+) (pilA) [Acinetobacter baumannii strain 10_4]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQSYIAKSQASEAFTLADGLKTTIATNLQAGTCFANGSAAATATDSVTGKY
GKAEILADTTSGSNGCGIKYTFNASNVSAKLKNGVIGIAVSENGVLKKSTVTATTSTLNEYLPQSFSGS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=470341 H2785_RS01505 WP_020753494.1 327275..327724(+) (pilA) [Acinetobacter baumannii strain 10_4]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATTGCGAT
TCCTGCTTATCAAAGTTATATTGCAAAATCTCAAGCTTCTGAAGCATTTACATTAGCAGATGGTCTAAAAACAACTATTG
CTACTAACTTGCAAGCTGGAACATGTTTCGCTAATGGTTCAGCTGCAGCAACAGCAACTGATTCAGTTACGGGTAAATAT
GGTAAAGCAGAAATTTTAGCAGATACAACGTCTGGTAGTAATGGATGTGGTATTAAATATACATTTAATGCATCAAATGT
ATCTGCTAAATTGAAAAACGGAGTTATTGGTATTGCTGTAAGTGAAAATGGTGTATTGAAGAAATCTACAGTAACAGCCA
CAACTTCTACATTAAATGAATATTTACCACAATCTTTCTCTGGTTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

67.785

100

0.678
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40

100

0.403
  pilA Vibrio cholerae strain A1552

40

100

0.403
  pilA Vibrio cholerae C6706

40

100

0.403