Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H2785_RS00950 Genome accession   NZ_CP059546
Coordinates   212829..213410 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain 10_4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207829..218410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS00925 (H2785_00925) - 208450..208803 (+) 354 WP_000580163.1 DUF1304 domain-containing protein -
  H2785_RS00930 (H2785_00930) - 208856..209197 (+) 342 WP_223069791.1 GlpM family protein -
  H2785_RS00935 (H2785_00935) tenA 209247..209921 (-) 675 WP_000899418.1 thiaminase II -
  H2785_RS00940 (H2785_00940) - 210184..211266 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -
  H2785_RS00945 (H2785_00945) - 211413..212777 (+) 1365 WP_000980460.1 MFS transporter -
  H2785_RS00950 (H2785_00950) ssb 212829..213410 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  H2785_RS00955 (H2785_00955) - 213983..215158 (+) 1176 WP_228128216.1 HlyD family secretion protein -
  H2785_RS00960 (H2785_00960) - 215160..217274 (+) 2115 WP_223069792.1 peptidase domain-containing ABC transporter -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=470335 H2785_RS00950 WP_001215080.1 212829..213410(+) (ssb) [Acinetobacter baumannii strain 10_4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=470335 H2785_RS00950 WP_001215080.1 212829..213410(+) (ssb) [Acinetobacter baumannii strain 10_4]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAACGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCCGCATCTGCACCAGCTGATTT
AGACGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394