Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H2786_RS17880 Genome accession   NZ_CP059542
Coordinates   3757748..3758878 (+) Length   376 a.a.
NCBI ID   WP_223082361.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E-011922     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3752748..3763878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS17855 (H2786_17850) - 3753009..3753215 (-) 207 WP_000182542.1 hypothetical protein -
  H2786_RS17860 (H2786_17855) - 3753268..3755382 (-) 2115 WP_223082358.1 TonB-dependent copper receptor -
  H2786_RS17865 (H2786_17860) - 3755455..3755883 (-) 429 WP_000231981.1 DUF2946 family protein -
  H2786_RS17870 (H2786_17865) def 3755920..3756450 (-) 531 WP_001196539.1 peptide deformylase -
  H2786_RS17875 (H2786_17870) tsaP 3756573..3757727 (+) 1155 WP_223082359.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H2786_RS17880 (H2786_17875) dprA 3757748..3758878 (+) 1131 WP_223082361.1 DNA-processing protein DprA Machinery gene
  H2786_RS17885 (H2786_17880) - 3758929..3759498 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  H2786_RS17890 (H2786_17885) - 3759891..3760811 (-) 921 WP_002042168.1 DMT family transporter -
  H2786_RS17895 (H2786_17890) - 3760917..3761567 (-) 651 WP_085943488.1 TetR/AcrR family transcriptional regulator -
  H2786_RS17900 (H2786_17895) - 3761704..3762918 (+) 1215 WP_000372643.1 MFS transporter -
  H2786_RS17905 (H2786_17900) - 3762940..3763704 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41858.41 Da        Isoelectric Point: 6.4984

>NTDB_id=470331 H2786_RS17880 WP_223082361.1 3757748..3758878(+) (dprA) [Acinetobacter baumannii strain E-011922]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQAASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTIFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=470331 H2786_RS17880 WP_223082361.1 3757748..3758878(+) (dprA) [Acinetobacter baumannii strain E-011922]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCAATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGCTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAACATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCATATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.872

100

0.979

  dprA Acinetobacter baumannii strain A118

97.606

100

0.976

  dprA Acinetobacter baylyi ADP1

70.079

100

0.71

  dprA Vibrio cholerae strain A1552

42.598

88.032

0.375