Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   JR441_RS14120 Genome accession   NZ_CP069789
Coordinates   2728392..2729087 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2723392..2734087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS14095 (JR441_14095) minD 2724328..2725134 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  JR441_RS14100 (JR441_14100) minC 2725136..2725816 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  JR441_RS14105 (JR441_14105) mreD 2725869..2726387 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  JR441_RS14110 (JR441_14110) mreC 2726384..2727256 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  JR441_RS14115 (JR441_14115) mreB 2727287..2728300 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JR441_RS14120 (JR441_14120) ysxA/radC 2728392..2729087 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  JR441_RS14125 (JR441_14125) maf 2729124..2729693 (-) 570 WP_088467303.1 Maf family nucleotide pyrophosphatase -
  JR441_RS14130 (JR441_14130) spoIIB 2729846..2730844 (-) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  JR441_RS14135 (JR441_14135) comC 2730978..2731724 (-) 747 WP_088467305.1 A24 family peptidase Machinery gene
  JR441_RS14140 (JR441_14140) folC 2731864..2733156 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=470252 JR441_RS14120 WP_014480455.1 2728392..2729087(-) (ysxA/radC) [Bacillus subtilis strain BIM B-569G]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=470252 JR441_RS14120 WP_014480455.1 2728392..2729087(-) (ysxA/radC) [Bacillus subtilis strain BIM B-569G]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCTAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424