Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H2N97_RS17870 Genome accession   NZ_CP059497
Coordinates   3594798..3595487 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JSRB 08     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589798..3600487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS17835 (H2N97_17835) - 3589996..3590478 (-) 483 WP_003151394.1 flagellar protein FlgN -
  H2N97_RS17840 (H2N97_17840) flgM 3590493..3590759 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2N97_RS17845 (H2N97_17845) - 3590829..3591248 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  H2N97_RS17850 (H2N97_17850) comFC 3591322..3592011 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  H2N97_RS17855 (H2N97_17855) - 3592017..3592301 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  H2N97_RS17860 (H2N97_17860) comFA 3592359..3593744 (-) 1386 WP_134986672.1 DEAD/DEAH box helicase Machinery gene
  H2N97_RS17865 (H2N97_17865) - 3593852..3594700 (-) 849 WP_015418336.1 DegV family protein -
  H2N97_RS17870 (H2N97_17870) degU 3594798..3595487 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H2N97_RS17875 (H2N97_17875) degS 3595564..3596727 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  H2N97_RS17880 (H2N97_17880) - 3596950..3597597 (+) 648 WP_007614107.1 YigZ family protein -
  H2N97_RS17885 (H2N97_17885) - 3597602..3598795 (+) 1194 WP_017418814.1 LCP family protein -
  H2N97_RS17890 (H2N97_17890) - 3598895..3599971 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=470241 H2N97_RS17870 WP_003219701.1 3594798..3595487(-) (degU) [Bacillus velezensis strain JSRB 08]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=470241 H2N97_RS17870 WP_003219701.1 3594798..3595487(-) (degU) [Bacillus velezensis strain JSRB 08]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1