Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H2N97_RS17860 Genome accession   NZ_CP059497
Coordinates   3592359..3593744 (-) Length   461 a.a.
NCBI ID   WP_134986672.1    Uniprot ID   -
Organism   Bacillus velezensis strain JSRB 08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587359..3598744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS17825 (H2N97_17825) flgL 3587534..3588451 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  H2N97_RS17830 (H2N97_17830) flgK 3588463..3589980 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  H2N97_RS17835 (H2N97_17835) - 3589996..3590478 (-) 483 WP_003151394.1 flagellar protein FlgN -
  H2N97_RS17840 (H2N97_17840) flgM 3590493..3590759 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2N97_RS17845 (H2N97_17845) - 3590829..3591248 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  H2N97_RS17850 (H2N97_17850) comFC 3591322..3592011 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  H2N97_RS17855 (H2N97_17855) - 3592017..3592301 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  H2N97_RS17860 (H2N97_17860) comFA 3592359..3593744 (-) 1386 WP_134986672.1 DEAD/DEAH box helicase Machinery gene
  H2N97_RS17865 (H2N97_17865) - 3593852..3594700 (-) 849 WP_015418336.1 DegV family protein -
  H2N97_RS17870 (H2N97_17870) degU 3594798..3595487 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H2N97_RS17875 (H2N97_17875) degS 3595564..3596727 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  H2N97_RS17880 (H2N97_17880) - 3596950..3597597 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52583.00 Da        Isoelectric Point: 10.2370

>NTDB_id=470240 H2N97_RS17860 WP_134986672.1 3592359..3593744(-) (comFA) [Bacillus velezensis strain JSRB 08]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAVPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=470240 H2N97_RS17860 WP_134986672.1 3592359..3593744(-) (comFA) [Bacillus velezensis strain JSRB 08]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGTGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618