Detailed information NTG0047023

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPSNT_RS00210
• Genome accession: NC_017376
• Coordinates: 38945..40075 (+)
• Length: 376 a.a.
• NCBI ID: WP_001045863.1
• Uniprot ID: -
• Organism: Helicobacter pylori SNT49
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33945..45075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSNT_RS00175 (HPSNT_00160)	panD	34396..34749 (+)	354	WP_000142229.1	aspartate 1-decarboxylase	-
HPSNT_RS00180 (HPSNT_00165)	-	34752..35045 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPSNT_RS00185 (HPSNT_00170)	-	35045..36049 (+)	1005	WP_000468459.1	PDZ domain-containing protein	-
HPSNT_RS00190 (HPSNT_00175)	comB6	36057..37112 (+)	1056	WP_000786650.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSNT_RS00195 (HPSNT_00180)	comB7	37128..37241 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPSNT_RS00200 (HPSNT_00185)	comB8	37238..37981 (+)	744	WP_001208407.1	type IV secretion system protein	Machinery gene
HPSNT_RS00205 (HPSNT_00190)	comB9	37981..38952 (+)	972	WP_014536647.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSNT_RS00210 (HPSNT_00195)	comB10	38945..40075 (+)	1131	WP_001045863.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSNT_RS00215 (HPSNT_00200)	-	40145..41557 (+)	1413	WP_000694844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPSNT_RS00220 (HPSNT_00205)	gmd	41587..42732 (+)	1146	WP_000659832.1	GDP-mannose 4,6-dehydratase	-
HPSNT_RS00225 (HPSNT_00210)	-	42725..43657 (+)	933	WP_001002914.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42019.54 Da
• Isoelectric Point: 9.7760

>NTDB_id=47023 HPSNT_RS00210 WP_001045863.1 38945..40075(+) (comB10) [Helicobacter pylori SNT49]
MNKWLKGALVFAGGFATIITISLIYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQNPKNYEENLIFPMDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=47023 HPSNT_RS00210 WP_001045863.1 38945..40075(+) (comB10) [Helicobacter pylori SNT49]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGCAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAAAATCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTCAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAACCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAGGCCGTCTTGATCCCCA
AAGGTTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTGTGGAGCCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACCAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAACTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGGAGCAGAGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.479	100	0.955