Detailed information NTG0047019

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPSNT_RS00190
• Genome accession: NC_017376
• Coordinates: 36057..37112 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786650.1
• Uniprot ID: -
• Organism: Helicobacter pylori SNT49
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31057..42112

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSNT_RS00160 (HPSNT_00145)	-	31470..31883 (+)	414	WP_001023008.1	universal stress protein	-
HPSNT_RS00165 (HPSNT_00150)	-	31906..32181 (+)	276	WP_000708538.1	ATP-dependent Clp protease adaptor ClpS	-
HPSNT_RS00170 (HPSNT_00155)	-	32181..34406 (+)	2226	WP_001051471.1	AAA family ATPase	-
HPSNT_RS00175 (HPSNT_00160)	panD	34396..34749 (+)	354	WP_000142229.1	aspartate 1-decarboxylase	-
HPSNT_RS00180 (HPSNT_00165)	-	34752..35045 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPSNT_RS00185 (HPSNT_00170)	-	35045..36049 (+)	1005	WP_000468459.1	PDZ domain-containing protein	-
HPSNT_RS00190 (HPSNT_00175)	comB6	36057..37112 (+)	1056	WP_000786650.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSNT_RS00195 (HPSNT_00180)	comB7	37128..37241 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPSNT_RS00200 (HPSNT_00185)	comB8	37238..37981 (+)	744	WP_001208407.1	type IV secretion system protein	Machinery gene
HPSNT_RS00205 (HPSNT_00190)	comB9	37981..38952 (+)	972	WP_014536647.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSNT_RS00210 (HPSNT_00195)	comB10	38945..40075 (+)	1131	WP_001045863.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSNT_RS00215 (HPSNT_00200)	-	40145..41557 (+)	1413	WP_000694844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39708.59 Da
• Isoelectric Point: 9.0419

>NTDB_id=47019 HPSNT_RS00190 WP_000786650.1 36057..37112(+) (comB6) [Helicobacter pylori SNT49]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMFFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNTIFIAPNMIAQSLSQSLGNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANFSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=47019 HPSNT_RS00190 WP_000786650.1 36057..37112(+) (comB6) [Helicobacter pylori SNT49]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGTTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACACTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGGGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTACAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTACTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATCAACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACTTCAGTCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterProScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.726	100	0.957