Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPSNT_RS00195 | Genome accession | NC_017376 |
| Coordinates | 37128..37241 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori SNT49 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32128..42241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSNT_RS00170 (HPSNT_00155) | - | 32181..34406 (+) | 2226 | WP_001051471.1 | AAA family ATPase | - |
| HPSNT_RS00175 (HPSNT_00160) | panD | 34396..34749 (+) | 354 | WP_000142229.1 | aspartate 1-decarboxylase | - |
| HPSNT_RS00180 (HPSNT_00165) | - | 34752..35045 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSNT_RS00185 (HPSNT_00170) | - | 35045..36049 (+) | 1005 | WP_000468459.1 | PDZ domain-containing protein | - |
| HPSNT_RS00190 (HPSNT_00175) | comB6 | 36057..37112 (+) | 1056 | WP_000786650.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPSNT_RS00195 (HPSNT_00180) | comB7 | 37128..37241 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPSNT_RS00200 (HPSNT_00185) | comB8 | 37238..37981 (+) | 744 | WP_001208407.1 | type IV secretion system protein | Machinery gene |
| HPSNT_RS00205 (HPSNT_00190) | comB9 | 37981..38952 (+) | 972 | WP_014536647.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPSNT_RS00210 (HPSNT_00195) | comB10 | 38945..40075 (+) | 1131 | WP_001045863.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPSNT_RS00215 (HPSNT_00200) | - | 40145..41557 (+) | 1413 | WP_000694844.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=47020 HPSNT_RS00195 WP_001217873.1 37128..37241(+) (comB7) [Helicobacter pylori SNT49]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=47020 HPSNT_RS00195 WP_001217873.1 37128..37241(+) (comB7) [Helicobacter pylori SNT49]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |