Detailed information NTG0047022

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPSNT_RS00205
• Genome accession: NC_017376
• Coordinates: 37981..38952 (+)
• Length: 323 a.a.
• NCBI ID: WP_014536647.1
• Uniprot ID: G2MCV3
• Organism: Helicobacter pylori SNT49
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32981..43952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSNT_RS00175 (HPSNT_00160)	panD	34396..34749 (+)	354	WP_000142229.1	aspartate 1-decarboxylase	-
HPSNT_RS00180 (HPSNT_00165)	-	34752..35045 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPSNT_RS00185 (HPSNT_00170)	-	35045..36049 (+)	1005	WP_000468459.1	PDZ domain-containing protein	-
HPSNT_RS00190 (HPSNT_00175)	comB6	36057..37112 (+)	1056	WP_000786650.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSNT_RS00195 (HPSNT_00180)	comB7	37128..37241 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPSNT_RS00200 (HPSNT_00185)	comB8	37238..37981 (+)	744	WP_001208407.1	type IV secretion system protein	Machinery gene
HPSNT_RS00205 (HPSNT_00190)	comB9	37981..38952 (+)	972	WP_014536647.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSNT_RS00210 (HPSNT_00195)	comB10	38945..40075 (+)	1131	WP_001045863.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSNT_RS00215 (HPSNT_00200)	-	40145..41557 (+)	1413	WP_000694844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPSNT_RS00220 (HPSNT_00205)	gmd	41587..42732 (+)	1146	WP_000659832.1	GDP-mannose 4,6-dehydratase	-
HPSNT_RS00225 (HPSNT_00210)	-	42725..43657 (+)	933	WP_001002914.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 37130.62 Da
• Isoelectric Point: 9.3414

>NTDB_id=47022 HPSNT_RS00205 WP_014536647.1 37981..38952(+) (comB9) [Helicobacter pylori SNT49]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMHDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLSFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIDDKN
YYSNAFMKPQNKENKENTFENAPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSK
KSKPSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKG
KDE

Nucleotide

• Length: 972 bp

>NTDB_id=47022 HPSNT_RS00205 WP_014536647.1 37981..38952(+) (comB9) [Helicobacter pylori SNT49]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCATGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAGGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTCTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCTCTACAAATTGGCGTAGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGACGATAAAAAC
TATTACTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATAAAGAAAATACCTTTGAAAATGCCCCCACAAACAACAA
GCCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACTATTGGCGATAGCACCAATGCGATGAAAATCG
TTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAA
AAATCCAAACCCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGC
GCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTGTGGGCGATTACA
TTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGT
AAAGATGAATAA

Domains

Predicted by InterProScan.

• Conjugal transfer protein (CagX) (62-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.945	100	0.938