Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H2N74_RS08540 Genome accession   NZ_CP059495
Coordinates   1689983..1690762 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain JSRB 166     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684983..1695762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N74_RS08520 (H2N74_08520) trmFO 1685670..1686977 (+) 1308 WP_029973471.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H2N74_RS08525 (H2N74_08525) xerC 1687047..1687964 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  H2N74_RS08530 (H2N74_08530) hslV 1687980..1688525 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  H2N74_RS08535 (H2N74_08535) hslU 1688542..1689945 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  H2N74_RS08540 (H2N74_08540) codY 1689983..1690762 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H2N74_RS08545 (H2N74_08545) flgB 1691116..1691505 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  H2N74_RS08550 (H2N74_08550) flgC 1691505..1691957 (+) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  H2N74_RS08555 (H2N74_08555) fliE 1691968..1692288 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  H2N74_RS08560 (H2N74_08560) fliF 1692331..1693941 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  H2N74_RS08565 (H2N74_08565) fliG 1693954..1694970 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  H2N74_RS08570 (H2N74_08570) fliH 1694963..1695718 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=470130 H2N74_RS08540 WP_003154263.1 1689983..1690762(+) (codY) [Bacillus velezensis strain JSRB 166]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=470130 H2N74_RS08540 WP_003154263.1 1689983..1690762(+) (codY) [Bacillus velezensis strain JSRB 166]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAACTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471