Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JSQ77_RS05515 Genome accession   NZ_CP069712
Coordinates   1144060..1144536 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain EA13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1139060..1149536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ77_RS05485 (JSQ77_05490) - 1141219..1142064 (-) 846 WP_001280435.1 DUF4942 domain-containing protein -
  JSQ77_RS05490 (JSQ77_05495) - 1142161..1142358 (-) 198 WP_000839263.1 DUF957 domain-containing protein -
  JSQ77_RS05495 (JSQ77_05500) - 1142370..1142858 (-) 489 WP_001177592.1 DUF5983 family protein -
  JSQ77_RS05500 (JSQ77_05505) cbtA 1142849..1143232 (-) 384 WP_000854822.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  JSQ77_RS05505 (JSQ77_05510) - 1143322..1143690 (-) 369 WP_053271974.1 type IV toxin-antitoxin system YeeU family antitoxin -
  JSQ77_RS05510 (JSQ77_05515) - 1143770..1143991 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  JSQ77_RS05515 (JSQ77_05520) radC 1144060..1144536 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  JSQ77_RS05520 (JSQ77_05525) - 1144551..1145036 (-) 486 WP_000214317.1 antirestriction protein -
  JSQ77_RS05525 (JSQ77_05530) - 1145127..1145945 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  JSQ77_RS05530 (JSQ77_05535) - 1146272..1149118 (-) 2847 WP_112901592.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=470089 JSQ77_RS05515 WP_001186747.1 1144060..1144536(-) (radC) [Escherichia coli strain EA13]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=470089 JSQ77_RS05515 WP_001186747.1 1144060..1144536(-) (radC) [Escherichia coli strain EA13]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392