Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H2R00_RS17950 Genome accession   NZ_CP059494
Coordinates   3644441..3645175 (+) Length   244 a.a.
NCBI ID   WP_182069986.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639441..3650175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS17925 degS 3639737..3640894 (+) 1158 WP_003185733.1 histidine kinase Regulator
  H2R00_RS17930 degU 3640976..3641665 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  H2R00_RS17935 - 3641785..3642627 (+) 843 WP_182069984.1 DegV family protein -
  H2R00_RS17940 comFA 3642751..3644145 (+) 1395 WP_182071113.1 DEAD/DEAH box helicase Machinery gene
  H2R00_RS17945 - 3644200..3644484 (+) 285 WP_182069985.1 late competence development ComFB family protein -
  H2R00_RS17950 comFC 3644441..3645175 (+) 735 WP_182069986.1 double zinc ribbon domain-containing protein Machinery gene
  H2R00_RS17955 - 3645234..3645653 (+) 420 WP_154999584.1 TIGR03826 family flagellar region protein -
  H2R00_RS17960 flgM 3645733..3645999 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2R00_RS17965 - 3646018..3646494 (+) 477 WP_106071063.1 flagellar protein FlgN -
  H2R00_RS17970 flgK 3646510..3648033 (+) 1524 WP_176276612.1 flagellar hook-associated protein FlgK -
  H2R00_RS17975 flgL 3648044..3648955 (+) 912 WP_182069987.1 flagellar hook-associated protein FlgL -
  H2R00_RS17980 - 3649006..3649572 (+) 567 WP_182069988.1 DUF6470 family protein -
  H2R00_RS17985 fliW 3649594..3650025 (+) 432 WP_182071114.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27864.43 Da        Isoelectric Point: 9.7712

>NTDB_id=470089 H2R00_RS17950 WP_182069986.1 3644441..3645175(+) (comFC) [Bacillus haynesii strain P19]
MTTRFAKAIEKGGNKLNCLICEAPLLDSLSWHAFFFLRSEEKICRACKENFIKIKGTVCPKCGRPQESEELCGDCAKWEA
DPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFINAFHQYCRRTPAVLVPIPLSEERKAERGFNQAERL
ASLLKRPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=470089 H2R00_RS17950 WP_182069986.1 3644441..3645175(+) (comFC) [Bacillus haynesii strain P19]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGGAATAAACTGAATTGCTTAATTTGTGAAGCGCCTCTTTTAGA
TTCTCTCTCATGGCATGCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGAGAATTTTATCAAGA
TTAAAGGAACCGTGTGCCCTAAGTGTGGACGGCCCCAGGAGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAAGCT
GATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATCTCTACAATACCTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTCATTCATCAATGCTTTCCATCAATATTGTCGCC
GCACCCCTGCTGTTTTGGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTTAATCAGGCGGAGCGGCTT
GCTTCCTTATTAAAAAGACCCGTTATTCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAAAGA
GCGGATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGATCAGTAAAGAATCTGGATATCATATTGATTGACGACTTGT
ATACGACAGGGGCGACCCTTCATCATGCCGCTGATTGTCTGATGACATCCGGAGAGGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.586

97.131

0.52