Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H2R00_RS17940 Genome accession   NZ_CP059494
Coordinates   3642751..3644145 (+) Length   464 a.a.
NCBI ID   WP_182071113.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637751..3649145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS17915 - 3637785..3638861 (-) 1077 WP_154999579.1 LCP family protein -
  H2R00_RS17920 - 3638876..3639514 (-) 639 WP_076788730.1 YigZ family protein -
  H2R00_RS17925 degS 3639737..3640894 (+) 1158 WP_003185733.1 histidine kinase Regulator
  H2R00_RS17930 degU 3640976..3641665 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  H2R00_RS17935 - 3641785..3642627 (+) 843 WP_182069984.1 DegV family protein -
  H2R00_RS17940 comFA 3642751..3644145 (+) 1395 WP_182071113.1 DEAD/DEAH box helicase Machinery gene
  H2R00_RS17945 - 3644200..3644484 (+) 285 WP_182069985.1 late competence development ComFB family protein -
  H2R00_RS17950 comFC 3644441..3645175 (+) 735 WP_182069986.1 double zinc ribbon domain-containing protein Machinery gene
  H2R00_RS17955 - 3645234..3645653 (+) 420 WP_154999584.1 TIGR03826 family flagellar region protein -
  H2R00_RS17960 flgM 3645733..3645999 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2R00_RS17965 - 3646018..3646494 (+) 477 WP_106071063.1 flagellar protein FlgN -
  H2R00_RS17970 flgK 3646510..3648033 (+) 1524 WP_176276612.1 flagellar hook-associated protein FlgK -
  H2R00_RS17975 flgL 3648044..3648955 (+) 912 WP_182069987.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52833.51 Da        Isoelectric Point: 9.5466

>NTDB_id=470088 H2R00_RS17940 WP_182071113.1 3642751..3644145(+) (comFA) [Bacillus haynesii strain P19]
MIHIEHPAIYSRELRSCIEQRHLLKSELPFPESVIDWHIQEGLIKTEEGIKKTKRGFICLRCGQHERSCFARYPCYRCSK
CCVYCRSCVMMGRVSECTPLLTWHAHGRHEWAPVHKEWKGTLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNSLRVCIATPRTDVVLELAPRFRQAFPGAEIAALYGGGSDVGALSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLHTVCIPARFHRSPLPEPILIWCGDWKGSLKRRKVPFRLK
KWLFKHQELQHPVFLFVPSIPVLKSVVSLLKKETFRAEGVYAEDPDRNEKVNQFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESEVFTESALVQMAGRAGRHPEHTAGDVCFFHYGRTKWMNAARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=470088 H2R00_RS17940 WP_182071113.1 3642751..3644145(+) (comFA) [Bacillus haynesii strain P19]
GTGATTCATATCGAACATCCGGCAATCTATTCCCGTGAATTGCGGTCATGTATTGAGCAGCGTCACCTTCTGAAAAGTGA
ACTTCCTTTTCCGGAATCTGTCATTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGGGGCTTTATTTGCTTGAGGTGCGGCCAGCACGAACGCTCATGTTTTGCTCGATATCCTTGCTATAGGTGCAGTAAA
TGTTGCGTGTACTGCCGGTCCTGCGTCATGATGGGCAGGGTGAGCGAGTGTACGCCTCTGTTGACTTGGCACGCGCATGG
CAGACATGAATGGGCGCCTGTTCACAAAGAGTGGAAAGGCACGCTTTCAGCAGGTCAGGAAAAAGCGGCCAAATCCATTA
TCGATGCTATACGAAGGAAAGAGGAGCTTTTAATCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATTGAATTCGCGCTGAACAACAGCTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTCGTGCTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGCGGAAATTGCCGCTTTATACGGAGGGGGCTCAGACGTTGGGGCCCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATTATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACACATCTATTTGACCGCCAC
GCCTTCTGCGGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCTGTATTCCCGCGAGATTCCATCGCAGCC
CGCTGCCTGAACCTATATTGATTTGGTGCGGAGATTGGAAAGGGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTTTATTTGTTCCCTCTATCCCTGTTCTTAAATCCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGAAGACCCTGACAGAAATGAAAAAGTGAACCAAT
TTAGAGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGAGGTTTTTACTGAAAGCGCCCTCGTCCAAATGGCCGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGCTGGGGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTGGATGAATGCGGCACGGCGTCATATTCAAAATATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-424)

Type III restriction enzyme, res subunit (ResIII)

(122-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.55

98.707

0.558