Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H2R00_RS17930 Genome accession   NZ_CP059494
Coordinates   3640976..3641665 (+) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus haynesii strain P19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635976..3646665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS17905 - 3636137..3637201 (+) 1065 WP_154999577.1 MraY family glycosyltransferase -
  H2R00_RS17910 - 3637331..3637705 (+) 375 WP_182069983.1 hypothetical protein -
  H2R00_RS17915 - 3637785..3638861 (-) 1077 WP_154999579.1 LCP family protein -
  H2R00_RS17920 - 3638876..3639514 (-) 639 WP_076788730.1 YigZ family protein -
  H2R00_RS17925 degS 3639737..3640894 (+) 1158 WP_003185733.1 histidine kinase Regulator
  H2R00_RS17930 degU 3640976..3641665 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  H2R00_RS17935 - 3641785..3642627 (+) 843 WP_182069984.1 DegV family protein -
  H2R00_RS17940 comFA 3642751..3644145 (+) 1395 WP_182071113.1 DEAD/DEAH box helicase Machinery gene
  H2R00_RS17945 - 3644200..3644484 (+) 285 WP_182069985.1 late competence development ComFB family protein -
  H2R00_RS17950 comFC 3644441..3645175 (+) 735 WP_182069986.1 double zinc ribbon domain-containing protein Machinery gene
  H2R00_RS17955 - 3645234..3645653 (+) 420 WP_154999584.1 TIGR03826 family flagellar region protein -
  H2R00_RS17960 flgM 3645733..3645999 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2R00_RS17965 - 3646018..3646494 (+) 477 WP_106071063.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=470087 H2R00_RS17930 WP_003185730.1 3640976..3641665(+) (degU) [Bacillus haynesii strain P19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=470087 H2R00_RS17930 WP_003185730.1 3640976..3641665(+) (degU) [Bacillus haynesii strain P19]
GTGACTAAAGTAAATATTGTAATCATTGATGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTCA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTACCTGCATCCTAAGGTTACGCATA
ATCTTGTGAATGAATTCCGCCGCCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACAAGAAGGGAATGCGAGGTTCTCCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987