Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H2R00_RS01635 Genome accession   NZ_CP059494
Coordinates   325042..325671 (+) Length   209 a.a.
NCBI ID   WP_154994395.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320042..330671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS01600 aroE 320685..321521 (+) 837 WP_154994407.1 shikimate dehydrogenase -
  H2R00_RS01605 yhbY 321515..321805 (+) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  H2R00_RS01610 - 321824..322393 (+) 570 WP_182070343.1 nicotinate-nucleotide adenylyltransferase -
  H2R00_RS01615 yqeK 322383..322946 (+) 564 WP_182070344.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  H2R00_RS01620 rsfS 322960..323316 (+) 357 WP_003183699.1 ribosome silencing factor -
  H2R00_RS01625 - 323313..324068 (+) 756 WP_154994399.1 class I SAM-dependent methyltransferase -
  H2R00_RS01630 comER 324138..324959 (-) 822 WP_217903537.1 late competence protein ComER -
  H2R00_RS01635 comEA 325042..325671 (+) 630 WP_154994395.1 helix-hairpin-helix domain-containing protein Machinery gene
  H2R00_RS01640 - 325739..326308 (+) 570 WP_154994394.1 ComE operon protein 2 -
  H2R00_RS01645 - 326313..328700 (+) 2388 WP_182070345.1 DNA internalization-related competence protein ComEC/Rec2 -
  H2R00_RS01650 - 328725..328856 (-) 132 WP_003183686.1 YqzM family protein -
  H2R00_RS01655 holA 329086..330111 (+) 1026 WP_182070346.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22402.28 Da        Isoelectric Point: 5.0202

>NTDB_id=470032 H2R00_RS01635 WP_154994395.1 325042..325671(+) (comEA) [Bacillus haynesii strain P19]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSFPEEASAQTFDKKEEAKREKNAGKEEVIIDLKGAVKNPGV
YQMKEGDRVHDALKKAGGTVKKADQKQINLAAVLQDGMVVYIPFEGEETAGSLSEAGSRAEGNSGGLVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFQTIEDITNVSGIGEKSFERIKSSITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=470032 H2R00_RS01635 WP_154994395.1 325042..325671(+) (comEA) [Bacillus haynesii strain P19]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCCGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCGGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCTTTTCCTGAGGAGGCTTCTGCACAGACTTTTGACAAGAAAG
AGGAGGCGAAGCGGGAAAAAAACGCGGGGAAAGAGGAGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGTGTC
TATCAAATGAAGGAGGGAGACAGGGTGCACGATGCATTGAAAAAAGCAGGCGGCACCGTGAAAAAAGCGGACCAAAAACA
AATTAATCTGGCAGCCGTTTTGCAGGACGGTATGGTTGTTTACATTCCATTTGAAGGGGAAGAGACAGCTGGTTCTCTTT
CGGAAGCGGGCTCAAGAGCAGAAGGCAATTCCGGTGGTCTCGTCAATATTAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCAGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGTGAGGAGAACGGACCGTTTCAGACGATCGAAGA
CATCACGAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTTCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(69-123)

Helix-hairpin-helix motif (HHH_3)

(146-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

55.14

100

0.565
  comEA Staphylococcus aureus N315

35.455

100

0.373
  comEA Staphylococcus aureus MW2

35.455

100

0.373
  comEA Lactococcus lactis subsp. cremoris KW2

35.945

100

0.373