Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOLKNPGA_RS15125 Genome accession   NZ_CP059400
Coordinates   3454616..3455086 (+) Length   156 a.a.
NCBI ID   WP_182350677.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3449616..3460086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS15100 (FOLKNPGA_03068) - 3449689..3451047 (+) 1359 WP_182350673.1 MFS transporter -
  FOLKNPGA_RS19045 (FOLKNPGA_03069) - 3451064..3451258 (+) 195 WP_232891334.1 hypothetical protein -
  FOLKNPGA_RS15110 (FOLKNPGA_03070) queF 3451506..3452363 (-) 858 WP_340163020.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  FOLKNPGA_RS19235 - 3452604..3452756 (-) 153 Protein_3002 MerR family DNA-binding transcriptional regulator -
  FOLKNPGA_RS15115 (FOLKNPGA_03071) - 3452849..3453472 (+) 624 WP_182350675.1 NUDIX hydrolase -
  FOLKNPGA_RS15120 (FOLKNPGA_03072) - 3453532..3454476 (+) 945 WP_182350676.1 MerR family transcriptional regulator -
  FOLKNPGA_RS15125 (FOLKNPGA_03073) ssb 3454616..3455086 (+) 471 WP_182350677.1 single-stranded DNA-binding protein Machinery gene
  FOLKNPGA_RS15130 (FOLKNPGA_03074) - 3455233..3455712 (-) 480 WP_182350678.1 DUF421 domain-containing protein -
  FOLKNPGA_RS15135 (FOLKNPGA_03075) - 3456142..3456501 (+) 360 WP_182350679.1 cupin domain-containing protein -
  FOLKNPGA_RS15140 (FOLKNPGA_03076) rplQ 3456670..3457053 (-) 384 WP_182350680.1 50S ribosomal protein L17 -
  FOLKNPGA_RS15145 (FOLKNPGA_03077) rpoA 3457072..3458064 (-) 993 WP_182350681.1 DNA-directed RNA polymerase subunit alpha -
  FOLKNPGA_RS15150 (FOLKNPGA_03078) rpsD 3458083..3458703 (-) 621 WP_182350682.1 30S ribosomal protein S4 -
  FOLKNPGA_RS15155 (FOLKNPGA_03079) rpsK 3458720..3459118 (-) 399 WP_003633055.1 30S ribosomal protein S11 -
  FOLKNPGA_RS15160 (FOLKNPGA_03080) rpsM 3459140..3459496 (-) 357 WP_182350683.1 30S ribosomal protein S13 -
  FOLKNPGA_RS15165 rpmJ 3459574..3459687 (-) 114 WP_010946099.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17506.43 Da        Isoelectric Point: 4.7980

>NTDB_id=469394 FOLKNPGA_RS15125 WP_182350677.1 3454616..3455086(+) (ssb) [Legionella sp. PC1000]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSETWKDKVTSEKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYIE
GSLRTRKWQDQQGQDRYTTEIVANDIQMLDSKGAASSSFDEIPQAQFTPSNQNAGKQQPTQVPQDAFDQLDDDVPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=469394 FOLKNPGA_RS15125 WP_182350677.1 3454616..3455086(+) (ssb) [Legionella sp. PC1000]
ATGGCACGTGGTATAAATAAAGTCATCCTAATTGGCAATGTGGGTGTTGACCCTGATGTCCGTTATTTACCTAATGGAAA
TGCGGTCACTACATTGTCTATTGCTACGAGTGAAACGTGGAAAGATAAAGTAACAAGTGAAAAGCAAGAACGGACTGAAT
GGCATCGCGTTGTATGTTTTAACCGTTTAGGTGAAATAGCTGGTGAATATGTACGCAAAGGATCCAAGCTCTATATCGAA
GGTAGTTTAAGAACCAGAAAGTGGCAGGATCAACAAGGTCAGGATAGATACACTACTGAGATTGTAGCTAATGACATTCA
AATGCTAGATAGTAAAGGGGCTGCATCATCCAGCTTCGATGAGATCCCACAAGCCCAATTTACACCAAGTAACCAAAATG
CTGGAAAACAACAACCCACACAAGTACCGCAAGATGCTTTTGACCAATTGGATGATGATGTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.111

100

0.59
  ssb Vibrio cholerae strain A1552

49.143

100

0.551
  ssb Neisseria gonorrhoeae MS11

40

100

0.449
  ssb Neisseria meningitidis MC58

38.728

100

0.429