Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M001_RS19185 Genome accession   NZ_CP059396
Coordinates   4170661..4171248 (+) Length   195 a.a.
NCBI ID   WP_021231635.1    Uniprot ID   -
Organism   Aeromonas veronii Hm21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4165661..4176248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M001_RS19160 (M001_019160) - 4167175..4167696 (-) 522 WP_021231639.1 curlin -
  M001_RS19165 (M001_019165) - 4167884..4168723 (-) 840 WP_021231638.1 CsgG/HfaB family protein -
  M001_RS19170 (M001_019170) - 4168731..4169132 (-) 402 WP_019445195.1 curli assembly protein CsgF -
  M001_RS19175 (M001_019175) - 4169144..4169587 (-) 444 WP_021231637.1 curli production assembly/transport protein CsgE -
  M001_RS19180 (M001_019180) - 4169587..4170234 (-) 648 WP_021231636.1 LuxR C-terminal-related transcriptional regulator -
  M001_RS19185 (M001_019185) ssb 4170661..4171248 (+) 588 WP_021231635.1 single-stranded DNA-binding protein Machinery gene
  M001_RS19190 (M001_019190) - 4171373..4172128 (+) 756 WP_021231634.1 substrate-binding periplasmic protein -
  M001_RS22195 - 4172201..4172326 (-) 126 WP_019445191.1 hypothetical protein -
  M001_RS19195 (M001_019195) - 4172787..4173689 (+) 903 WP_021231632.1 cation diffusion facilitator family transporter -
  M001_RS19200 (M001_019200) yjbD 4173836..4174120 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  M001_RS19205 (M001_019205) cspA 4174715..4174927 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21493.96 Da        Isoelectric Point: 5.9247

>NTDB_id=469343 M001_RS19185 WP_021231635.1 4170661..4171248(+) (ssb) [Aeromonas veronii Hm21]
MASRGINKVILIGNLGKDPEVRYMPSGNAVANITLATSETWRDKQTGEQKERTEWHNVSLIGKLAEIAGEYLKKGSQVYV
EGKLQTRKWQDQSGQDRYTTEVLVDSFTGVMQMLGGRSQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=469343 M001_RS19185 WP_021231635.1 4170661..4171248(+) (ssb) [Aeromonas veronii Hm21]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGAAAGACCCGGAAGTACGCTACATGCCGAGTGG
CAATGCTGTGGCCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCATAACGTGTCTTTGATTGGCAAGCTGGCAGAGATTGCTGGTGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGTAAATGGCAGGATCAAAGTGGTCAAGATCGTTATACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTTCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AATATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.844

100

0.703
  ssb Glaesserella parasuis strain SC1401

53.368

98.974

0.528
  ssb Neisseria gonorrhoeae MS11

47.368

97.436

0.462
  ssb Neisseria meningitidis MC58

46.842

97.436

0.456