Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   M001_RS02115 Genome accession   NZ_CP059396
Coordinates   433001..433873 (-) Length   290 a.a.
NCBI ID   WP_021231279.1    Uniprot ID   -
Organism   Aeromonas veronii Hm21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428001..438873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M001_RS02090 (M001_002090) secA 428022..430742 (+) 2721 WP_005336144.1 preprotein translocase subunit SecA -
  M001_RS02095 (M001_002095) mutT 430927..431331 (+) 405 WP_019444787.1 8-oxo-dGTP diphosphatase MutT -
  M001_RS02100 (M001_002100) yacG 431409..431603 (-) 195 WP_021231282.1 DNA gyrase inhibitor YacG -
  M001_RS02105 (M001_002105) zapD 431613..432335 (-) 723 WP_021231281.1 cell division protein ZapD -
  M001_RS02110 (M001_002110) coaE 432373..432987 (-) 615 WP_021231280.1 dephospho-CoA kinase -
  M001_RS02115 (M001_002115) pilD 433001..433873 (-) 873 WP_021231279.1 prepilin peptidase Machinery gene
  M001_RS02120 (M001_002120) pilC 433935..435176 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  M001_RS02125 (M001_002125) pilB 435417..437123 (-) 1707 WP_021231278.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  M001_RS02130 (M001_002130) - 437127..437591 (-) 465 WP_021231277.1 pilin -
  M001_RS02135 (M001_002135) nadC 437910..438770 (-) 861 WP_021231276.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32160.44 Da        Isoelectric Point: 6.5932

>NTDB_id=469322 M001_RS02115 WP_021231279.1 433001..433873(-) (pilD) [Aeromonas veronii Hm21]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFATDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQTPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=469322 M001_RS02115 WP_021231279.1 433001..433873(-) (pilD) [Aeromonas veronii Hm21]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCG
CCACTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGACCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGGGGA
CGCTGGCCGCCCTGCTGCTGACCTGGGTACTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCTTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGACGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCAGCGCTGGGTGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.79

98.621

0.59
  pilD Vibrio campbellii strain DS40M4

55.749

98.966

0.552
  pilD Acinetobacter nosocomialis M2

53.237

95.862

0.51
  pilD Acinetobacter baumannii D1279779

52.878

95.862

0.507
  pilD Neisseria gonorrhoeae MS11

50.558

92.759

0.469