Detailed information NTG0046931

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPGAM_RS00210
• Genome accession: NC_017371
• Coordinates: 38613..39599 (+)
• Length: 328 a.a.
• NCBI ID: WP_014535912.1
• Uniprot ID: -
• Organism: Helicobacter pylori Gambia94/24
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33613..44599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPGAM_RS00180 (HPGAM_00165)	panD	35019..35372 (+)	354	WP_000142253.1	aspartate 1-decarboxylase	-
HPGAM_RS00185 (HPGAM_00170)	-	35375..35677 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPGAM_RS00190 (HPGAM_00175)	-	35677..36681 (+)	1005	WP_000965847.1	PDZ domain-containing protein	-
HPGAM_RS00195 (HPGAM_00180)	comB6	36689..37744 (+)	1056	WP_000679707.1	P-type conjugative transfer protein TrbL	Machinery gene
HPGAM_RS00200 (HPGAM_00185)	comB7	37760..37873 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
HPGAM_RS00205 (HPGAM_00190)	comB8	37870..38613 (+)	744	WP_000660560.1	type IV secretion system protein	Machinery gene
HPGAM_RS00210 (HPGAM_00195)	comB9	38613..39599 (+)	987	WP_014535912.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPGAM_RS00215 (HPGAM_00200)	comB10	39592..40722 (+)	1131	WP_001045764.1	DNA type IV secretion system protein ComB10	Machinery gene
HPGAM_RS00220 (HPGAM_00205)	-	40792..42204 (+)	1413	WP_000694972.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPGAM_RS00225 (HPGAM_00210)	gmd	42249..43394 (+)	1146	WP_000659847.1	GDP-mannose 4,6-dehydratase	-
HPGAM_RS00230 (HPGAM_00215)	-	43387..44319 (+)	933	WP_001002502.1	GDP-L-fucose synthase family protein	-
HPGAM_RS09050	-	44347..44535 (-)	189	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37907.68 Da
• Isoelectric Point: 9.4585

>NTDB_id=46931 HPGAM_RS00210 WP_014535912.1 38613..39599(+) (comB9) [Helicobacter pylori Gambia94/24]
MRKVLYALMGFLLAFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMTENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRSKGE

Nucleotide

• Length: 987 bp

>NTDB_id=46931 HPGAM_RS00210 WP_014535912.1 38613..39599(+) (comB9) [Helicobacter pylori Gambia94/24]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAATATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTCTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGACTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGTGATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.463	100	0.915