Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPGAM_RS00215 | Genome accession | NC_017371 |
| Coordinates | 39592..40722 (+) | Length | 376 a.a. |
| NCBI ID | WP_001045764.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34592..45722
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS00180 (HPGAM_00165) | panD | 35019..35372 (+) | 354 | WP_000142253.1 | aspartate 1-decarboxylase | - |
| HPGAM_RS00185 (HPGAM_00170) | - | 35375..35677 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPGAM_RS00190 (HPGAM_00175) | - | 35677..36681 (+) | 1005 | WP_000965847.1 | PDZ domain-containing protein | - |
| HPGAM_RS00195 (HPGAM_00180) | comB6 | 36689..37744 (+) | 1056 | WP_000679707.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPGAM_RS00200 (HPGAM_00185) | comB7 | 37760..37873 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HPGAM_RS00205 (HPGAM_00190) | comB8 | 37870..38613 (+) | 744 | WP_000660560.1 | type IV secretion system protein | Machinery gene |
| HPGAM_RS00210 (HPGAM_00195) | comB9 | 38613..39599 (+) | 987 | WP_014535912.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPGAM_RS00215 (HPGAM_00200) | comB10 | 39592..40722 (+) | 1131 | WP_001045764.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPGAM_RS00220 (HPGAM_00205) | - | 40792..42204 (+) | 1413 | WP_000694972.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPGAM_RS00225 (HPGAM_00210) | gmd | 42249..43394 (+) | 1146 | WP_000659847.1 | GDP-mannose 4,6-dehydratase | - |
| HPGAM_RS00230 (HPGAM_00215) | - | 43387..44319 (+) | 933 | WP_001002502.1 | GDP-L-fucose synthase family protein | - |
| HPGAM_RS09050 | - | 44347..44535 (-) | 189 | Protein_40 | anthranilate synthase component I | - |
| HPGAM_RS08680 (HPGAM_00225) | - | 44708..45142 (-) | 435 | WP_000466413.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41963.44 Da Isoelectric Point: 9.7473
>NTDB_id=46932 HPGAM_RS00215 WP_001045764.1 39592..40722(+) (comB10) [Helicobacter pylori Gambia94/24]
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPSNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPSNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=46932 HPGAM_RS00215 WP_001045764.1 39592..40722(+) (comB10) [Helicobacter pylori Gambia94/24]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTCAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAGCAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCCGGTAAAGTCATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTTTTGATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTCAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAGCAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCCGGTAAAGTCATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTTTTGATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.011 |
100 |
0.96 |