Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HPGAM_RS00195 | Genome accession | NC_017371 |
| Coordinates | 36689..37744 (+) | Length | 351 a.a. |
| NCBI ID | WP_000679707.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31689..42744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS00165 (HPGAM_00150) | - | 32111..32524 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| HPGAM_RS00170 (HPGAM_00155) | - | 32526..32801 (+) | 276 | WP_000781795.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HPGAM_RS00175 (HPGAM_00160) | - | 32801..35029 (+) | 2229 | WP_000357191.1 | AAA family ATPase | - |
| HPGAM_RS00180 (HPGAM_00165) | panD | 35019..35372 (+) | 354 | WP_000142253.1 | aspartate 1-decarboxylase | - |
| HPGAM_RS00185 (HPGAM_00170) | - | 35375..35677 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPGAM_RS00190 (HPGAM_00175) | - | 35677..36681 (+) | 1005 | WP_000965847.1 | PDZ domain-containing protein | - |
| HPGAM_RS00195 (HPGAM_00180) | comB6 | 36689..37744 (+) | 1056 | WP_000679707.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPGAM_RS00200 (HPGAM_00185) | comB7 | 37760..37873 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HPGAM_RS00205 (HPGAM_00190) | comB8 | 37870..38613 (+) | 744 | WP_000660560.1 | type IV secretion system protein | Machinery gene |
| HPGAM_RS00210 (HPGAM_00195) | comB9 | 38613..39599 (+) | 987 | WP_014535912.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPGAM_RS00215 (HPGAM_00200) | comB10 | 39592..40722 (+) | 1131 | WP_001045764.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPGAM_RS00220 (HPGAM_00205) | - | 40792..42204 (+) | 1413 | WP_000694972.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39695.59 Da Isoelectric Point: 8.8283
>NTDB_id=46928 HPGAM_RS00195 WP_000679707.1 36689..37744(+) (comB6) [Helicobacter pylori Gambia94/24]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMFFAYRSLKEQNFFSTSALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQHATTSPALSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMFFAYRSLKEQNFFSTSALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQHATTSPALSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=46928 HPGAM_RS00195 WP_000679707.1 36689..37744(+) (comB6) [Helicobacter pylori Gambia94/24]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGTTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCACTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCACTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGCCATAACGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
TCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTGCAGCATGCCA
CGACCTCGCCCGCTCTTTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGTTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCACTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCACTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGCCATAACGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
TCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTGCAGCATGCCA
CGACCTCGCCCGCTCTTTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
91.738 |
100 |
0.917 |