Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPGAM_RS00205 Genome accession   NC_017371
Coordinates   37870..38613 (+) Length   247 a.a.
NCBI ID   WP_000660560.1    Uniprot ID   -
Organism   Helicobacter pylori Gambia94/24     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32870..43613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPGAM_RS00180 (HPGAM_00165) panD 35019..35372 (+) 354 WP_000142253.1 aspartate 1-decarboxylase -
  HPGAM_RS00185 (HPGAM_00170) - 35375..35677 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HPGAM_RS00190 (HPGAM_00175) - 35677..36681 (+) 1005 WP_000965847.1 PDZ domain-containing protein -
  HPGAM_RS00195 (HPGAM_00180) comB6 36689..37744 (+) 1056 WP_000679707.1 P-type conjugative transfer protein TrbL Machinery gene
  HPGAM_RS00200 (HPGAM_00185) comB7 37760..37873 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  HPGAM_RS00205 (HPGAM_00190) comB8 37870..38613 (+) 744 WP_000660560.1 type IV secretion system protein Machinery gene
  HPGAM_RS00210 (HPGAM_00195) comB9 38613..39599 (+) 987 WP_014535912.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPGAM_RS00215 (HPGAM_00200) comB10 39592..40722 (+) 1131 WP_001045764.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPGAM_RS00220 (HPGAM_00205) - 40792..42204 (+) 1413 WP_000694972.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPGAM_RS00225 (HPGAM_00210) gmd 42249..43394 (+) 1146 WP_000659847.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28722.95 Da        Isoelectric Point: 8.9604

>NTDB_id=46930 HPGAM_RS00205 WP_000660560.1 37870..38613(+) (comB8) [Helicobacter pylori Gambia94/24]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APINRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=46930 HPGAM_RS00205 WP_000660560.1 37870..38613(+) (comB8) [Helicobacter pylori Gambia94/24]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCACTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAGTCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAGCCCAAAACAGCATTTAC
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTACCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTCACGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGATTAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.955

Multiple sequence alignment