Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H0S62_RS07345 Genome accession   NZ_CP059386
Coordinates   1488402..1489538 (-) Length   378 a.a.
NCBI ID   WP_000957666.1    Uniprot ID   A0A062IFS2
Organism   Acinetobacter baumannii strain 36-1512     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1483402..1494538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S62_RS07310 (H0S62_07310) atpD 1483449..1484843 (+) 1395 WP_000094481.1 F0F1 ATP synthase subunit beta -
  H0S62_RS07315 (H0S62_07315) - 1484861..1485280 (+) 420 WP_000224542.1 F0F1 ATP synthase subunit epsilon -
  H0S62_RS07320 (H0S62_07320) - 1485342..1485941 (-) 600 WP_000757144.1 hypothetical protein -
  H0S62_RS07325 (H0S62_07325) - 1486087..1486218 (-) 132 Protein_1409 glutathione peroxidase -
  H0S62_RS07330 (H0S62_07330) - 1486212..1486370 (+) 159 Protein_1410 TetR/AcrR family transcriptional regulator -
  H0S62_RS07335 (H0S62_07335) - 1486476..1487396 (+) 921 WP_001994180.1 DMT family transporter -
  H0S62_RS07340 (H0S62_07340) - 1487788..1488357 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  H0S62_RS07345 (H0S62_07345) dprA 1488402..1489538 (-) 1137 WP_000957666.1 DNA-processing protein DprA Machinery gene
  H0S62_RS07350 (H0S62_07350) tsaP 1489559..1490713 (-) 1155 WP_000755273.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H0S62_RS07355 (H0S62_07355) def 1490836..1491366 (+) 531 WP_001196539.1 peptide deformylase -
  H0S62_RS07360 (H0S62_07360) - 1491403..1491831 (+) 429 WP_000231981.1 DUF2946 family protein -
  H0S62_RS07365 (H0S62_07365) - 1491904..1494018 (+) 2115 WP_086238150.1 TonB-dependent copper receptor -
  H0S62_RS07370 (H0S62_07370) - 1494072..1494278 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42132.72 Da        Isoelectric Point: 6.4547

>NTDB_id=469250 H0S62_RS07345 WP_000957666.1 1488402..1489538(-) (dprA) [Acinetobacter baumannii strain 36-1512]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRSLY

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=469250 H0S62_RS07345 WP_000957666.1 1488402..1489538(-) (dprA) [Acinetobacter baumannii strain 36-1512]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAGGCTAATACGAATACTCCAGAAATTCCT
GAGCATCTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTTGTATTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062IFS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.138

99.471

0.976
  dprA Acinetobacter baumannii strain A118

97.872

99.471

0.974
  dprA Acinetobacter baylyi ADP1

70.496

100

0.714
  dprA Vibrio cholerae strain A1552

43.202

87.566

0.378