Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H0S62_RS04950 Genome accession   NZ_CP059386
Coordinates   1003748..1004488 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 36-1512     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998748..1009488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S62_RS04930 (H0S62_04930) aroB 999290..1000372 (-) 1083 WP_002057695.1 3-dehydroquinate synthase -
  H0S62_RS04935 (H0S62_04935) aroK 1000401..1000970 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H0S62_RS04940 (H0S62_04940) pilQ 1000982..1003147 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S62_RS04945 (H0S62_04945) pilP 1003210..1003737 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H0S62_RS04950 (H0S62_04950) pilO 1003748..1004488 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S62_RS04955 (H0S62_04955) pilN 1004485..1005126 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  H0S62_RS04960 (H0S62_04960) pilM 1005126..1006184 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H0S62_RS04965 (H0S62_04965) ponA 1006345..1008900 (+) 2556 WP_146050565.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=469244 H0S62_RS04950 WP_000076101.1 1003748..1004488(-) (pilO) [Acinetobacter baumannii strain 36-1512]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=469244 H0S62_RS04950 WP_000076101.1 1003748..1004488(-) (pilO) [Acinetobacter baumannii strain 36-1512]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683