Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H0S62_RS04945 Genome accession   NZ_CP059386
Coordinates   1003210..1003737 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 36-1512     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998210..1008737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S62_RS04925 (H0S62_04925) - 998399..999274 (-) 876 WP_002057710.1 hypothetical protein -
  H0S62_RS04930 (H0S62_04930) aroB 999290..1000372 (-) 1083 WP_002057695.1 3-dehydroquinate synthase -
  H0S62_RS04935 (H0S62_04935) aroK 1000401..1000970 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H0S62_RS04940 (H0S62_04940) pilQ 1000982..1003147 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S62_RS04945 (H0S62_04945) pilP 1003210..1003737 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H0S62_RS04950 (H0S62_04950) pilO 1003748..1004488 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S62_RS04955 (H0S62_04955) pilN 1004485..1005126 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  H0S62_RS04960 (H0S62_04960) pilM 1005126..1006184 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=469243 H0S62_RS04945 WP_000695065.1 1003210..1003737(-) (pilP) [Acinetobacter baumannii strain 36-1512]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=469243 H0S62_RS04945 WP_000695065.1 1003210..1003737(-) (pilP) [Acinetobacter baumannii strain 36-1512]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714