Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H0S62_RS04955 Genome accession   NZ_CP059386
Coordinates   1004485..1005126 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain 36-1512     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 999485..1010126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S62_RS04935 (H0S62_04935) aroK 1000401..1000970 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H0S62_RS04940 (H0S62_04940) pilQ 1000982..1003147 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S62_RS04945 (H0S62_04945) pilP 1003210..1003737 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H0S62_RS04950 (H0S62_04950) pilO 1003748..1004488 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S62_RS04955 (H0S62_04955) pilN 1004485..1005126 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  H0S62_RS04960 (H0S62_04960) pilM 1005126..1006184 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H0S62_RS04965 (H0S62_04965) ponA 1006345..1008900 (+) 2556 WP_146050565.1 penicillin-binding protein PBP1a -
  H0S62_RS04970 (H0S62_04970) - 1008919..1009743 (-) 825 WP_005122435.1 putative RNA methyltransferase -
  H0S62_RS04975 (H0S62_04975) - 1009746..1010078 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=469245 H0S62_RS04955 WP_000201223.1 1004485..1005126(-) (pilN) [Acinetobacter baumannii strain 36-1512]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=469245 H0S62_RS04955 WP_000201223.1 1004485..1005126(-) (pilN) [Acinetobacter baumannii strain 36-1512]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTTATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704