Detailed information NTG0046879

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPF32_RS06580
• Genome accession: NC_017366
• Coordinates: 1345635..1346771 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045742.1
• Uniprot ID: -
• Organism: Helicobacter pylori F32
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1340635..1351771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPF32_RS06560 (HPF32_1271)	hypE	1340821..1341819 (+)	999	WP_000378765.1	hydrogenase expression/formation protein HypE	-
HPF32_RS06565 (HPF32_1272)	-	1342069..1343001 (-)	933	WP_001002456.1	GDP-L-fucose synthase family protein	-
HPF32_RS06570 (HPF32_1273)	gmd	1342994..1344139 (-)	1146	WP_000659836.1	GDP-mannose 4,6-dehydratase	-
HPF32_RS06575 (HPF32_1274)	-	1344153..1345565 (-)	1413	WP_000694854.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPF32_RS06580 (HPF32_1275)	comB10	1345635..1346771 (-)	1137	WP_001045742.1	DNA type IV secretion system protein ComB10	Machinery gene
HPF32_RS06585 (HPF32_1276)	comB9	1346764..1347729 (-)	966	WP_014535464.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPF32_RS06590 (HPF32_1277)	comB8	1347729..1348472 (-)	744	WP_000660529.1	type IV secretion system protein	Machinery gene
HPF32_RS06595	comB7	1348469..1348594 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPF32_RS06600 (HPF32_1278)	comB6	1348610..1349665 (-)	1056	WP_000786683.1	P-type conjugative transfer protein TrbL	Machinery gene
HPF32_RS06605 (HPF32_1279)	-	1349671..1350666 (-)	996	WP_000902474.1	PDZ domain-containing protein	-
HPF32_RS06610 (HPF32_1280)	-	1350666..1350959 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPF32_RS06615 (HPF32_1281)	panD	1350962..1351315 (-)	354	WP_000142245.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42083.66 Da
• Isoelectric Point: 9.9312

>NTDB_id=46879 HPF32_RS06580 WP_001045742.1 1345635..1346771(-) (comB10) [Helicobacter pylori F32]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=46879 HPF32_RS06580 WP_001045742.1 1345635..1346771(-) (comB10) [Helicobacter pylori F32]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATTGCGCAAGTGGAGAGTGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTACTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96