Detailed information NTG0046883

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPF32_RS06600
• Genome accession: NC_017366
• Coordinates: 1348610..1349665 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786683.1
• Uniprot ID: -
• Organism: Helicobacter pylori F32
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1343610..1354665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPF32_RS06575 (HPF32_1274)	-	1344153..1345565 (-)	1413	WP_000694854.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPF32_RS06580 (HPF32_1275)	comB10	1345635..1346771 (-)	1137	WP_001045742.1	DNA type IV secretion system protein ComB10	Machinery gene
HPF32_RS06585 (HPF32_1276)	comB9	1346764..1347729 (-)	966	WP_014535464.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPF32_RS06590 (HPF32_1277)	comB8	1347729..1348472 (-)	744	WP_000660529.1	type IV secretion system protein	Machinery gene
HPF32_RS06595	comB7	1348469..1348594 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPF32_RS06600 (HPF32_1278)	comB6	1348610..1349665 (-)	1056	WP_000786683.1	P-type conjugative transfer protein TrbL	Machinery gene
HPF32_RS06605 (HPF32_1279)	-	1349671..1350666 (-)	996	WP_000902474.1	PDZ domain-containing protein	-
HPF32_RS06610 (HPF32_1280)	-	1350666..1350959 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPF32_RS06615 (HPF32_1281)	panD	1350962..1351315 (-)	354	WP_000142245.1	aspartate 1-decarboxylase	-
HPF32_RS06620 (HPF32_1282)	-	1351305..1353530 (-)	2226	WP_001051519.1	AAA family ATPase	-
HPF32_RS06625 (HPF32_1283)	-	1353530..1353805 (-)	276	WP_000784908.1	ATP-dependent Clp protease adaptor ClpS	-
HPF32_RS06630 (HPF32_1284)	-	1353825..1354238 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39925.92 Da
• Isoelectric Point: 8.8165

>NTDB_id=46883 HPF32_RS06600 WP_000786683.1 1348610..1349665(-) (comB6) [Helicobacter pylori F32]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDVHMQEKQDLSLLL
MVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46883 HPF32_RS06600 WP_000786683.1 1348610..1349665(-) (comB6) [Helicobacter pylori F32]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGTGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
ATGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGTACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCCACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963