Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D00_RS00960 Genome accession   NZ_CP059330
Coordinates   162162..162500 (+) Length   112 a.a.
NCBI ID   WP_006251644.1    Uniprot ID   A0A248ZWT2
Organism   Mannheimia haemolytica strain 0722     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 157162..167500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D00_RS00935 (H1D00_00955) rpsL 157441..157815 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  H1D00_RS00940 (H1D00_00960) rfaC 157936..158895 (-) 960 WP_240020234.1 lipopolysaccharide heptosyltransferase RfaC -
  H1D00_RS00945 (H1D00_00965) waaF 158962..160002 (-) 1041 WP_240021432.1 lipopolysaccharide heptosyltransferase II -
  H1D00_RS00950 (H1D00_00970) - 160024..160533 (-) 510 WP_240021433.1 MliC family protein -
  H1D00_RS00955 (H1D00_00975) - 160593..161870 (-) 1278 WP_240021434.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D00_RS00960 (H1D00_00980) comEA/comE1 162162..162500 (+) 339 WP_006251644.1 ComEA family DNA-binding protein Machinery gene
  H1D00_RS00965 (H1D00_00985) asd 162664..163557 (+) 894 WP_240021435.1 archaetidylserine decarboxylase -
  H1D00_RS00970 (H1D00_00990) - 163629..165980 (+) 2352 WP_240021436.1 DEAD/DEAH box helicase family protein -
  H1D00_RS00975 (H1D00_00995) - 166028..167500 (+) 1473 WP_240021437.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12111.91 Da        Isoelectric Point: 10.0993

>NTDB_id=468736 H1D00_RS00960 WP_006251644.1 162162..162500(+) (comEA/comE1) [Mannheimia haemolytica strain 0722]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468736 H1D00_RS00960 WP_006251644.1 162162..162500(+) (comEA/comE1) [Mannheimia haemolytica strain 0722]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248ZWT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.292

100

0.598
  comE1/comEA Haemophilus influenzae Rd KW20

52.747

81.25

0.429
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42