Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D01_RS08820 Genome accession   NZ_CP059329
Coordinates   1744737..1745078 (-) Length   113 a.a.
NCBI ID   WP_240024994.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0727     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739737..1750078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D01_RS08805 (H1D01_08835) - 1739740..1741209 (-) 1470 WP_240024991.1 class I SAM-dependent DNA methyltransferase -
  H1D01_RS08810 (H1D01_08840) - 1741257..1743608 (-) 2352 WP_240024992.1 DEAD/DEAH box helicase family protein -
  H1D01_RS08815 (H1D01_08845) asd 1743680..1744573 (-) 894 WP_240024993.1 archaetidylserine decarboxylase -
  H1D01_RS08820 (H1D01_08850) comEA/comE1 1744737..1745078 (-) 342 WP_240024994.1 ComEA family DNA-binding protein Machinery gene
  H1D01_RS08825 (H1D01_08855) - 1745370..1746698 (+) 1329 WP_240024995.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D01_RS08830 (H1D01_08860) - 1746763..1747179 (+) 417 WP_240024996.1 MliC family protein -
  H1D01_RS08835 (H1D01_08865) waaF 1747289..1748326 (+) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  H1D01_RS08840 (H1D01_08870) rfaC 1748391..1749350 (+) 960 WP_240024997.1 lipopolysaccharide heptosyltransferase RfaC -
  H1D01_RS08845 (H1D01_08875) rpsL 1749471..1749845 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12212.22 Da        Isoelectric Point: 8.5970

>NTDB_id=468727 H1D01_RS08820 WP_240024994.1 1744737..1745078(-) (comEA/comE1) [Mannheimia haemolytica strain 0727]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKXAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEXNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=468727 H1D01_RS08820 WP_240024994.1 1744737..1745078(-) (comEA/comE1) [Mannheimia haemolytica strain 0727]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAANAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGNNGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAANAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

100

0.575
  comEA Vibrio cholerae C6706

52.874

76.991

0.407
  comEA Vibrio cholerae strain A1552

52.874

76.991

0.407
  comE1/comEA Haemophilus influenzae Rd KW20

50

81.416

0.407