Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H1D02_RS06265 Genome accession   NZ_CP059328
Coordinates   1244149..1245294 (-) Length   381 a.a.
NCBI ID   WP_240028293.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0728     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1239149..1250294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D02_RS06235 (H1D02_06280) rplK 1239413..1239835 (-) 423 Protein_1216 50S ribosomal protein L11 -
  H1D02_RS06240 (H1D02_06285) nusG 1240073..1240636 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  H1D02_RS06245 (H1D02_06290) secE 1240638..1241051 (-) 414 WP_240028290.1 preprotein translocase subunit SecE -
  H1D02_RS06250 (H1D02_06295) - 1241164..1242186 (-) 1023 WP_240028291.1 LacI family DNA-binding transcriptional regulator -
  H1D02_RS06255 (H1D02_06300) - 1242417..1242686 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  H1D02_RS06260 (H1D02_06305) - 1242699..1244054 (+) 1356 WP_240028292.1 PTS ascorbate transporter subunit IIC -
  H1D02_RS06265 (H1D02_06310) dprA 1244149..1245294 (-) 1146 WP_240028293.1 DNA-processing protein DprA Machinery gene
  H1D02_RS06270 (H1D02_06315) def 1245384..1245896 (+) 513 WP_006248765.1 peptide deformylase -
  H1D02_RS06275 (H1D02_06320) rfaD 1245990..1246916 (+) 927 WP_006248766.1 ADP-glyceromanno-heptose 6-epimerase -
  H1D02_RS06280 (H1D02_06325) fabA 1246991..1247521 (-) 531 WP_240020346.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  H1D02_RS06285 (H1D02_06330) - 1247634..1249271 (-) 1638 WP_240028294.1 AAA family ATPase -
  H1D02_RS06290 (H1D02_06335) matP 1249364..1249810 (+) 447 WP_240028295.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42341.04 Da        Isoelectric Point: 5.0956

>NTDB_id=468699 H1D02_RS06265 WP_240028293.1 1244149..1245294(-) (dprA) [Mannheimia haemolytica strain 0728]
MAYQYDLLRLLQVQIGPQRIGRLLAELDFAEFCAYDKTQLRQIGWNEKQIQRWFNPDKNWIEQALTWAEQPNQQILSLFD
KAYPFLLRQISTAPPILFVKGNVESLSLPQIAIVGSRDYSPYGEYWAGQFAADLVKHNMAVTSGLAIGIDGFAHKKVVEY
QGITIAVLGSGLNRIYPARHQKLAEQIVESGGALVSEFSPNQPPIAENFPRRNRIISGLSLGTLVIEATINSGSLITARY
ALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEXVEDILEAVASQYQPQQIPLFDEPKPIVSTSLQAVKSSEKFAKNP
PNLTACQQQIYQHISLEPIAIDDLARATELTIETLLVELLGLELAGVIKQVSGXYVMDNGY

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=468699 H1D02_RS06265 WP_240028293.1 1244149..1245294(-) (dprA) [Mannheimia haemolytica strain 0728]
ATGGCATATCAGTATGATTTATTGCGTTTGTTGCAGGTGCAAATTGGTCCGCAGCGAATCGGACGGTTATTGGCAGAGTT
GGATTTTGCCGAATTTTGTGCCTACGATAAAACACAGTTAAGGCAGATCGGCTGGAATGAAAAGCAGATTCAGCGTTGGT
TTAATCCGGATAAAAATTGGATTGAGCAGGCACTAACTTGGGCGGAGCAGCCGAATCAGCAAATCCTGAGTTTATTTGAT
AAAGCTTATCCTTTCTTGCTGCGGCAAATTTCCACCGCTCCGCCGATTTTATTTGTAAAGGGTAATGTCGAAAGCCTTTC
CTTACCGCAAATTGCGATTGTTGGGAGTCGGGATTATTCGCCCTACGGTGAATATTGGGCGGGGCAATTTGCCGCTGACT
TGGTGAAGCACAATATGGCGGTGACTAGCGGTTTAGCGATTGGCATTGACGGTTTTGCACATAAAAAAGTAGTGGAATAT
CAAGGTATTACGATTGCTGTGTTGGGCAGTGGCTTAAACCGGATTTACCCCGCACGCCATCAAAAACTGGCTGAACAAAT
TGTCGAGTCAGGTGGTGCGTTGGTGTCTGAATTTTCACCTAATCAGCCTCCGATTGCTGAAAATTTCCCACGCCGAAACC
GCATAATCAGCGGTTTATCGCTCGGCACTTTGGTGATTGAAGCAACCATTAATAGTGGCTCTTTAATTACCGCTCGCTAT
GCCCTTGAACAAGGTCGGGAGGTGTTTGCGTTACCGAATGCGGTGCAAAACCCTTACGCACAAGGTTGCCACAAGCTAAT
TAAAGAAGGGGCGTTGCTTGTGGAGNGGGTGGAAGATATTTTAGAGGCGGTCGCCTCTCAATATCAACCTCAACAAATCC
CTTTGTTTGATGAGCCTAAGCCAATAGTAAGCACATCTTTACAAGCGGTCAAAAGTAGCGAAAAATTTGCAAAAAATCCG
CCAAATCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCTATAGCGATTGACGATTTAGCCAGAGC
TACAGAGTTAACGATTGAGACATTGCTAGTTGAATTACTGGGGCTGGAATTAGCCGGCGTAATTAAACAAGTGAGTGGGN
GGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-275)

DprA winged helix domain (DprA_WH)

(316-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.016

100

0.74
  dprA Haemophilus influenzae Rd KW20

51.02

90.026

0.459
  dprA Vibrio campbellii strain DS40M4

45.082

96.063

0.433
  dprA Vibrio cholerae strain A1552

41.758

95.538

0.399
  dprA Legionella pneumophila strain ERS1305867

40.988

90.289

0.37