Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D02_RS04910 Genome accession   NZ_CP059328
Coordinates   1011312..1011650 (-) Length   112 a.a.
NCBI ID   WP_240028217.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0728     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006312..1016650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D02_RS04895 (H1D02_04920) - 1006312..1007784 (-) 1473 WP_240028214.1 class I SAM-dependent DNA methyltransferase -
  H1D02_RS04900 (H1D02_04925) - 1007832..1010183 (-) 2352 WP_240028215.1 DEAD/DEAH box helicase family protein -
  H1D02_RS04905 (H1D02_04930) asd 1010255..1011148 (-) 894 WP_240028216.1 archaetidylserine decarboxylase -
  H1D02_RS04910 (H1D02_04935) comEA/comE1 1011312..1011650 (-) 339 WP_240028217.1 ComEA family DNA-binding protein Machinery gene
  H1D02_RS04915 (H1D02_04940) - 1011943..1013220 (+) 1278 WP_240028218.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D02_RS04920 (H1D02_04945) - 1013280..1013696 (+) 417 WP_240028219.1 MliC family protein -
  H1D02_RS04925 (H1D02_04950) waaF 1013807..1014844 (+) 1038 WP_020824266.1 lipopolysaccharide heptosyltransferase II -
  H1D02_RS04930 (H1D02_04955) rfaC 1014910..1015869 (+) 960 WP_240028220.1 lipopolysaccharide heptosyltransferase RfaC -
  H1D02_RS04935 (H1D02_04960) rpsL 1015990..1016364 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12102.62 Da        Isoelectric Point: 9.7700

>NTDB_id=468698 H1D02_RS04910 WP_240028217.1 1011312..1011650(-) (comEA/comE1) [Mannheimia haemolytica strain 0728]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKXAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468698 H1D02_RS04910 WP_240028217.1 1011312..1011650(-) (comEA/comE1) [Mannheimia haemolytica strain 0728]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAANAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.407

100

0.589
  comE1/comEA Haemophilus influenzae Rd KW20

51.648

81.25

0.42
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411