Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H1D03_RS08895 Genome accession   NZ_CP059327
Coordinates   1781094..1782239 (-) Length   381 a.a.
NCBI ID   WP_006251919.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0729     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1776094..1787239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D03_RS08865 (H1D03_08890) rplK 1776355..1776735 (-) 381 WP_240017523.1 50S ribosomal protein L11 -
  H1D03_RS08870 (H1D03_08895) nusG 1777015..1777578 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  H1D03_RS08875 (H1D03_08900) secE 1777580..1777996 (-) 417 WP_240028513.1 preprotein translocase subunit SecE -
  H1D03_RS08880 (H1D03_08905) - 1778109..1779131 (-) 1023 WP_240028291.1 LacI family DNA-binding transcriptional regulator -
  H1D03_RS08885 (H1D03_08910) - 1779362..1779631 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  H1D03_RS08890 (H1D03_08915) - 1779644..1780999 (+) 1356 WP_006251920.1 PTS ascorbate transporter subunit IIC -
  H1D03_RS08895 (H1D03_08920) dprA 1781094..1782239 (-) 1146 WP_006251919.1 DNA-processing protein DprA Machinery gene
  H1D03_RS08900 (H1D03_08925) def 1782328..1782840 (+) 513 WP_006248765.1 peptide deformylase -
  H1D03_RS08905 (H1D03_08930) rfaD 1782934..1783860 (+) 927 WP_006248766.1 ADP-glyceromanno-heptose 6-epimerase -
  H1D03_RS08910 (H1D03_08935) fabA 1783937..1784467 (-) 531 WP_240028514.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  H1D03_RS08915 (H1D03_08940) - 1784580..1786217 (-) 1638 WP_240028515.1 AAA family ATPase -
  H1D03_RS08920 (H1D03_08945) matP 1786310..1786756 (+) 447 WP_240028295.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42217.37 Da        Isoelectric Point: 5.0956

>NTDB_id=468680 H1D03_RS08895 WP_006251919.1 1781094..1782239(-) (dprA) [Mannheimia haemolytica strain 0729]
MAYQYDLLRLLQVQIGPQRIGRLLAELDFAEFCAYDKTQLRQIGWNEKQIQRWFNPDKNWIEQALTWAEQPNQQILSLFD
KAYPFLLRQISTAPPILFVKGNVESLSLPQIAIVGSRDYSPYGEYWAGQFAADLVKHNMAVTSGLAIGIDGFAHKKVVEY
QGITIAVLGSGLNRIYPARHQKLAEQIVESGGALVSEFSPNQPPIAENFPRRNRIISGLSLGTLVIEATINSGSLITARY
ALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEAVASQYQPQQIPLFDEPKPIVSTSLQAVKSSEKFAKNP
PNLTACQQQIYQHISLEPIAIDDLARATELTIETLLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=468680 H1D03_RS08895 WP_006251919.1 1781094..1782239(-) (dprA) [Mannheimia haemolytica strain 0729]
ATGGCATATCAGTATGATTTATTGCGTTTGTTGCAGGTGCAAATTGGTCCGCAGCGAATCGGACGGTTATTGGCAGAGTT
GGATTTTGCCGAATTTTGTGCCTACGATAAAACACAGTTAAGGCAGATCGGCTGGAATGAAAAGCAGATTCAGCGTTGGT
TTAATCCGGATAAAAATTGGATTGAGCAGGCACTAACTTGGGCGGAGCAGCCGAATCAGCAAATCCTGAGTTTATTTGAT
AAAGCTTATCCTTTCTTGCTGCGGCAAATTTCCACCGCTCCGCCGATTTTATTTGTAAAGGGTAATGTCGAAAGCCTTTC
CTTACCGCAAATTGCGATTGTTGGGAGTCGGGATTATTCGCCCTACGGTGAATATTGGGCGGGGCAATTTGCCGCTGACT
TGGTGAAGCACAATATGGCGGTGACTAGCGGTTTAGCGATTGGCATTGACGGTTTTGCACATAAAAAAGTAGTGGAATAT
CAAGGTATTACGATTGCTGTGTTGGGCAGTGGCTTAAACCGGATTTACCCCGCACGCCATCAAAAACTGGCTGAACAAAT
TGTCGAGTCAGGTGGTGCGTTGGTGTCTGAATTTTCACCTAATCAGCCTCCGATTGCTGAAAATTTCCCACGCCGAAACC
GCATAATCAGCGGTTTATCGCTCGGCACTTTGGTGATTGAAGCAACCATTAATAGTGGCTCTTTAATTACCGCTCGCTAT
GCCCTTGAACAAGGTCGGGAGGTGTTTGCGTTACCGAATGCGGTGCAAAACCCTTACGCACAAGGTTGCCACAAGCTAAT
TAAAGAAGGGGCGTTGCTTGTGGAGGGGGTGGAAGATATTTTAGAGGCGGTCGCCTCTCAATATCAACCTCAACAAATCC
CTTTGTTTGATGAGCCTAAGCCAATAGTAAGCACATCTTTACAAGCGGTCAAAAGTAGCGAAAAATTTGCAAAAAATCCG
CCAAATCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCTATAGCGATTGACGATTTAGCCAGAGC
TACAGAGTTAACGATTGAGACATTGCTAGTTGAATTACTGGGGCTGGAATTAGCCGGCGTAATTAAACAAGTGAGTGGGG
GGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(316-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

100

0.743
  dprA Haemophilus influenzae Rd KW20

51.02

90.026

0.459
  dprA Vibrio campbellii strain DS40M4

45.355

96.063

0.436
  dprA Vibrio cholerae strain A1552

42.033

95.538

0.402
  dprA Legionella pneumophila strain ERS1305867

41.279

90.289

0.373