Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D03_RS07540 Genome accession   NZ_CP059327
Coordinates   1548233..1548571 (-) Length   112 a.a.
NCBI ID   WP_240028462.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0729     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543233..1553571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D03_RS07530 (H1D03_07540) - 1544750..1547104 (-) 2355 WP_240028460.1 DEAD/DEAH box helicase family protein -
  H1D03_RS07535 (H1D03_07545) asd 1547176..1548069 (-) 894 WP_240028461.1 archaetidylserine decarboxylase -
  H1D03_RS07540 (H1D03_07550) comEA/comE1 1548233..1548571 (-) 339 WP_240028462.1 ComEA family DNA-binding protein Machinery gene
  H1D03_RS07545 (H1D03_07555) - 1548863..1550140 (+) 1278 WP_240028463.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D03_RS07550 (H1D03_07560) - 1550201..1550617 (+) 417 WP_240028219.1 MliC family protein -
  H1D03_RS07555 (H1D03_07565) waaF 1550727..1551767 (+) 1041 WP_240028464.1 lipopolysaccharide heptosyltransferase II -
  H1D03_RS07560 (H1D03_07570) rfaC 1551833..1552792 (+) 960 WP_240028465.1 lipopolysaccharide heptosyltransferase RfaC -
  H1D03_RS07565 (H1D03_07575) rpsL 1552913..1553287 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.33 Da        Isoelectric Point: 8.5970

>NTDB_id=468679 H1D03_RS07540 WP_240028462.1 1548233..1548571(-) (comEA/comE1) [Mannheimia haemolytica strain 0729]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKXAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEXNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468679 H1D03_RS07540 WP_240028462.1 1548233..1548571(-) (comEA/comE1) [Mannheimia haemolytica strain 0729]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAANAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAANAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.522

100

0.58
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411
  comE1/comEA Haemophilus influenzae Rd KW20

50.549

81.25

0.411