Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H1D03_RS05655 Genome accession   NZ_CP059327
Coordinates   1178467..1179780 (+) Length   437 a.a.
NCBI ID   WP_006252205.1    Uniprot ID   A0A378NH42
Organism   Mannheimia haemolytica strain 0729     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1173467..1184780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D03_RS05630 (H1D03_05650) - 1173619..1176183 (-) 2565 WP_240028072.1 penicillin-binding protein 1A -
  H1D03_RS05635 (H1D03_05655) - 1176307..1177005 (+) 699 WP_240020005.1 competence protein ComA -
  H1D03_RS05640 (H1D03_05660) - 1176981..1177346 (+) 366 WP_240021569.1 hypothetical protein -
  H1D03_RS05645 (H1D03_05665) - 1177503..1178039 (+) 537 WP_006247935.1 hypothetical protein -
  H1D03_RS05650 (H1D03_05670) - 1178042..1178458 (+) 417 WP_240029006.1 hypothetical protein -
  H1D03_RS05655 (H1D03_05675) comE 1178467..1179780 (+) 1314 WP_006252205.1 type IV pilus secretin PilQ Machinery gene
  H1D03_RS05660 (H1D03_05680) nusB 1179860..1180273 (+) 414 WP_006247938.1 transcription antitermination factor NusB -
  H1D03_RS05665 (H1D03_05685) thiL 1180336..1181316 (+) 981 WP_240029007.1 thiamine-phosphate kinase -
  H1D03_RS05670 (H1D03_05690) - 1181321..1181794 (+) 474 WP_240028074.1 phosphatidylglycerophosphatase A -
  H1D03_RS05675 (H1D03_05695) - 1181801..1182424 (+) 624 WP_240029008.1 LysE family transporter -
  H1D03_RS05680 (H1D03_05700) ruvA 1182536..1183141 (+) 606 WP_006252204.1 Holliday junction branch migration protein RuvA -
  H1D03_RS05685 (H1D03_05705) ruvB 1183278..1184282 (+) 1005 WP_006252203.1 Holliday junction branch migration DNA helicase RuvB -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 48468.47 Da        Isoelectric Point: 7.5799

>NTDB_id=468673 H1D03_RS05655 WP_006252205.1 1178467..1179780(+) (comE) [Mannheimia haemolytica strain 0729]
MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNMVLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQ
EDDIVYIHKKEEKAADLTPLPIMNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNDVTNNLNVN
FPITGGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLG
LEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIK
RLFSQTRDKISKRELVIFVTPYILQSNEKSSNHKKSK

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=468673 H1D03_RS05655 WP_006252205.1 1178467..1179780(+) (comE) [Mannheimia haemolytica strain 0729]
ATGTGGCGAATTTTTATATATTTCTTATGCGGTTTTTCATTAGCCTATGCGAATACCATTTCCATAGTTTTAAAAAATGC
TCCAACTTCGCTTATTTTTACTTATTTAGCGGAAGAAACCGGTAAAAATATGGTGCTTGATGATAATATTGAAACCAAAT
CAACACTACGATTAGAAAATAAATCGGTTGACGAGATTTTTAAAACGCTTGGCAAAGTCAATAAATTATCCTTAACGCAA
GAAGATGATATTGTTTATATTCACAAAAAAGAGGAAAAAGCGGCTGACTTAACGCCTCTGCCAATAATGAATTTGCAAAA
TAATGGGCAAAATACACCGCTTGTCACCGCCCCTAAGTTAATCACAAAAACCTTGAAACTACATTATGCAAAGGCTTCAG
AGGTGATTGAGTCGTTAACCAAAGGCAGCGGAACGTTTTTATCGGAAAACGGTTATATTCACTTTGATGAAAGAAGCAAT
AGCCTGATTGTGAAAGACAGTGCAAAATCGCTTAAAAATATCGAGAATTTAGTAAAACAGCTCGACCAACCCACCGAGCA
AATTGCGATTGAGGCTAGAATTGTCACTATCAGTAGCGAGCATTTGCAAGAGCTTGGCGTTCGCTGGGGAATTTTTTCTC
GTGGGGCTGGGCACTATAAATTTGGCGGACGGCTGGAAGGCAATGGACTCAACGATGTCACCAATAACTTAAATGTAAAT
TTTCCGATTACTGGTGGAGCATCTGCCGTATTACAGGTTGCGTCCATTAATAGCAGAGTGCTTGATTTAGAATTAAGTGC
ATTAGAACAAGAAAATAGTGTGGAAATTATTGCCAGCCCACGCCTGTTAACCACCAATAAAAAGCCGGCAAGTATCAAGC
AAGGCACGGAAATTCCTTATGTGATGTACAACACCAAATCGGAAGCCACCGATGTCGAATTTAAAGAAGCGGTATTAGGG
CTTGAAGTCGTTCCACACCTTTCAACCCAAAATCAAATTCTACTCGATCTGATCGTTACCCAAAATTCGCCAAATTCCCA
ATCCGGCAGTAGTGGCTTAATTACGATTGATAAACAAGAGCTAAATACGCAAGTATTTGCCAAACACGGCGAAACCATTG
TACTTGGTGGTATTTTTCAACATTTAACCCAAAAAGGCGAAGATAAAGTGCCGATTTTAGGCTCAATTCCCTTCATCAAG
CGGTTATTTAGTCAAACTCGAGATAAAATCAGCAAAAGAGAGCTAGTCATTTTTGTGACGCCTTATATCCTTCAATCTAA
TGAAAAGAGCAGCAACCACAAAAAATCAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(267-424)

Bacterial type II/III secretion system short domain (Secretin_N)

(122-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378NH42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

63.073

99.771

0.629
  comE Haemophilus influenzae Rd KW20

51.034

99.542

0.508
  comE Haemophilus influenzae 86-028NP

50.345

99.542

0.501
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.192

96.339

0.378
  pilQ Vibrio cholerae strain A1552

39.192

96.339

0.378
  pilQ Vibrio campbellii strain DS40M4

37.355

98.627

0.368