Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H1D05_RS03300 Genome accession   NZ_CP059325
Coordinates   667067..668215 (-) Length   382 a.a.
NCBI ID   WP_240020343.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0746     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 662067..673215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D05_RS03270 (H1D05_03255) rplK 662331..662759 (-) 429 WP_240020339.1 50S ribosomal protein L11 -
  H1D05_RS03275 (H1D05_03260) nusG 662992..663555 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  H1D05_RS03280 (H1D05_03265) secE 663557..663970 (-) 414 WP_240020340.1 preprotein translocase subunit SecE -
  H1D05_RS03285 (H1D05_03270) - 664082..665107 (-) 1026 WP_240020341.1 LacI family DNA-binding transcriptional regulator -
  H1D05_RS03290 (H1D05_03275) - 665338..665607 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  H1D05_RS03295 (H1D05_03280) - 665620..666972 (+) 1353 WP_240020342.1 PTS ascorbate transporter subunit IIC -
  H1D05_RS03300 (H1D05_03285) dprA 667067..668215 (-) 1149 WP_240020343.1 DNA-processing protein DprA Machinery gene
  H1D05_RS03305 (H1D05_03290) def 668303..668818 (+) 516 WP_240020344.1 peptide deformylase -
  H1D05_RS03310 (H1D05_03295) rfaD 668912..669841 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  H1D05_RS03315 (H1D05_03300) fabA 669908..670438 (-) 531 WP_240020346.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  H1D05_RS03320 (H1D05_03305) - 670551..672188 (-) 1638 WP_240020347.1 AAA family ATPase -
  H1D05_RS03325 (H1D05_03310) - 672281..672730 (+) 450 Protein_635 Ter macrodomain-binding protein MatP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42479.25 Da        Isoelectric Point: 4.9609

>NTDB_id=468628 H1D05_RS03300 WP_240020343.1 667067..668215(-) (dprA) [Mannheimia haemolytica strain 0746]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQXIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAXN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=468628 H1D05_RS03300 WP_240020343.1 667067..668215(-) (dprA) [Mannheimia haemolytica strain 0746]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAANAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCANAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.351

99.215

0.728
  dprA Haemophilus influenzae Rd KW20

51.304

90.314

0.463
  dprA Vibrio campbellii strain DS40M4

44.744

97.12

0.435
  dprA Vibrio cholerae strain A1552

42.588

97.12

0.414
  dprA Legionella pneumophila strain ERS1305867

40.29

90.314

0.364