Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D05_RS02250 Genome accession   NZ_CP059325
Coordinates   453813..454151 (+) Length   112 a.a.
NCBI ID   WP_240020236.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0746     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448813..459151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D05_RS02225 (H1D05_02215) rpsL 449037..449411 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  H1D05_RS02230 (H1D05_02220) rfaC 449532..450491 (-) 960 WP_240020234.1 lipopolysaccharide heptosyltransferase RfaC -
  H1D05_RS02235 (H1D05_02225) waaF 450557..451594 (-) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  H1D05_RS02240 (H1D05_02230) - 451704..452123 (-) 420 WP_240020235.1 MliC family protein -
  H1D05_RS14210 - 452187..452543 (-) 357 WP_339328303.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D05_RS02250 (H1D05_02240) comEA/comE1 453813..454151 (+) 339 WP_240020236.1 ComEA family DNA-binding protein Machinery gene
  H1D05_RS02255 (H1D05_02245) asd 454315..455208 (+) 894 Protein_434 archaetidylserine decarboxylase -
  H1D05_RS02260 (H1D05_02250) - 455280..457634 (+) 2355 WP_240020237.1 DEAD/DEAH box helicase family protein -
  H1D05_RS02265 (H1D05_02255) - 457682..459151 (+) 1470 WP_240020238.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12130.67 Da        Isoelectric Point: 9.7700

>NTDB_id=468626 H1D05_RS02250 WP_240020236.1 453813..454151(+) (comEA/comE1) [Mannheimia haemolytica strain 0746]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
KNGNFKNIEQLVEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468626 H1D05_RS02250 WP_240020236.1 453813..454151(+) (comEA/comE1) [Mannheimia haemolytica strain 0746]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGTTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.407

100

0.589
  comE1/comEA Haemophilus influenzae Rd KW20

51.648

81.25

0.42
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411