Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H1D05_RS00635 Genome accession   NZ_CP059325
Coordinates   138798..140123 (+) Length   441 a.a.
NCBI ID   WP_240020007.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0746     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133798..145123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D05_RS00605 (H1D05_00600) - 133950..136517 (-) 2568 WP_240020003.1 penicillin-binding protein 1A -
  H1D05_RS00610 (H1D05_00605) - 136641..137339 (+) 699 WP_240020005.1 competence protein ComA -
  H1D05_RS00615 - 137315..137491 (+) 177 WP_240020006.1 hypothetical protein -
  H1D05_RS00620 - 137539..137835 (+) 297 WP_239686595.1 hypothetical protein -
  H1D05_RS00625 (H1D05_00615) - 137837..138373 (+) 537 WP_006247935.1 hypothetical protein -
  H1D05_RS00630 (H1D05_00620) - 138376..138789 (+) 414 WP_006247936.1 hypothetical protein -
  H1D05_RS00635 (H1D05_00625) comE 138798..140123 (+) 1326 WP_240020007.1 type IV pilus secretin PilQ Machinery gene
  H1D05_RS00640 (H1D05_00630) nusB 140194..140607 (+) 414 WP_006247938.1 transcription antitermination factor NusB -
  H1D05_RS00645 (H1D05_00635) thiL 140670..141650 (+) 981 WP_006247939.1 thiamine-phosphate kinase -
  H1D05_RS00650 (H1D05_00640) - 141655..142128 (+) 474 WP_240020008.1 phosphatidylglycerophosphatase A -
  H1D05_RS00655 (H1D05_00645) - 142135..142758 (+) 624 WP_240020009.1 LysE family transporter -
  H1D05_RS00660 (H1D05_00650) ruvA 142870..143475 (+) 606 WP_006247943.1 Holliday junction branch migration protein RuvA -
  H1D05_RS00665 (H1D05_00655) ruvB 143612..144616 (+) 1005 WP_006247944.1 Holliday junction branch migration DNA helicase RuvB -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 48891.06 Da        Isoelectric Point: 7.1883

>NTDB_id=468622 H1D05_RS00635 WP_240020007.1 138798..140123(+) (comE) [Mannheimia haemolytica strain 0746]
MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNMVLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQ
EDDIVYIHXKEEKAADLTPLPIMNLQNNGQNTPLVTAPKLITKTLKLHYAKASXEVIESLTKGSGTFLSENGYIHFDERS
NSLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNNVTNNLNV
NFPITGGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVL
GLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTXKGEDKVPILGSIPFI
KRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKNQNSTS

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=468622 H1D05_RS00635 WP_240020007.1 138798..140123(+) (comE) [Mannheimia haemolytica strain 0746]
ATGTGGCGAATTTTTATATATTTCTTATGCGGTTTTTCATTAGCCTATGCGAATACCATTTCCATAGTTTTAAAAAATGC
TCCAACTTCGCTTATTTTTACTTATTTAGCGGAAGAAACCGGTAAAAATATGGTGCTTGATGATAATATTGAAACCAAAT
CAACACTACGATTAGAAAATAAATCGGTTGACGAGATTTTTAAAACGCTTGGCAAAGTCAATAAATTATCCTTAACGCAA
GAAGATGATATTGTTTATATTCACAANAAAGAGGAAAAAGCGGCTGACTTAACGCCTCTGCCAATAATGAATTTGCAAAA
TAATGGGCAAAATACACCGCTTGTCACCGCCCCTAAGTTAATCACAAAAACCTTGAAACTACATTATGCAAAGGCTTCCN
NAGAGGTGATTGAGTCGTTAACCAAAGGCAGCGGAACGTTTTTATCGGAAAACGGTTATATTCACTTTGATGAAAGAAGC
AATAGCCTGATTGTGAAAGACAGTGCAAAATCGCTTAAAAATATCGAGAATTTAGTAAAACAGCTCGACCAACCCACCGA
GCAAATTGCGATTGAGGCTAGAATTGTCACTATCAGTAGCGAGCATTTGCAAGAGCTTGGCGTTCGCTGGGGAATTTTTT
CTCGTGGGGCTGGGCACTATAAATTTGGCGGACGGCTGGAAGGCAATGGACTCAACAATGTCACCAATAACTTAAATGTA
AATTTTCCGATTACTGGTGGAGCATCTGCCGTATTACAGGTTTCGTCCATTAATAGCAGAGTGCTTGATTTAGAATTAAG
TGCATTAGAACAAGAAAATAGTGTGGAAATTATTGCCAGCCCACGCCTGTTAACCACCAATAAAAAGCCGGCAAGTATCA
AGCAAGGCACGGAAATTCCTTATGTGATGTACAACACCAAATCGGAAGCCACCGATGTCGAATTTAAAGAAGCGGTATTA
GGGCTTGAAGTCGTTCCACACCTTTCAACCCAAAATCAAATTCTACTCGATCTGATCGTTACCCAAAATTCGCCAAATTC
CCAATCCGGCAGTAGTGGCTTAATTACGATTGATAAACAAGAGCTAAATACGCAAGTATTTGCCAAACACGGCGAAACCA
TTGTACTTGGTGGTATTTTTCAACATTTAACCCANAAAGGCGAAGATAAAGTGCCGATTTTAGGCTCAATTCCCTTCATC
AAGCGGTTATTTAGTCAAACTCGAGATAAAATCAGCAAAAGAGAGCTAGTCATTTTTGTGACGCCTTATATCCTTCAATC
TAATGAAAAGAGCAGCAACCGCAAAAATCAAAATAGCACATCATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(268-425)

Bacterial type II/III secretion system short domain (Secretin_N)

(58-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

63.785

97.052

0.619
  comE Haemophilus influenzae Rd KW20

50.337

100

0.508
  comE Haemophilus influenzae 86-028NP

50.229

98.866

0.497
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

38.152

95.692

0.365
  pilQ Vibrio cholerae strain A1552

38.152

95.692

0.365
  pilQ Vibrio campbellii strain DS40M4

37.442

97.506

0.365