Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D06_RS07835 Genome accession   NZ_CP059324
Coordinates   1555893..1556231 (+) Length   112 a.a.
NCBI ID   WP_240017638.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0760     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550893..1561231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D06_RS07810 (H1D06_07830) rpsL 1551184..1551558 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  H1D06_RS07815 (H1D06_07835) rfaC 1551679..1552638 (-) 960 WP_240017636.1 lipopolysaccharide heptosyltransferase RfaC -
  H1D06_RS07820 (H1D06_07840) waaF 1552704..1553741 (-) 1038 WP_020824266.1 lipopolysaccharide heptosyltransferase II -
  H1D06_RS07825 (H1D06_07845) - 1553851..1554267 (-) 417 WP_240017637.1 MliC family protein -
  H1D06_RS07830 (H1D06_07850) - 1554327..1555601 (-) 1275 WP_142778023.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D06_RS07835 (H1D06_07855) comEA/comE1 1555893..1556231 (+) 339 WP_240017638.1 ComEA family DNA-binding protein Machinery gene
  H1D06_RS07840 (H1D06_07860) asd 1556378..1557286 (+) 909 WP_240018874.1 archaetidylserine decarboxylase -
  H1D06_RS12935 (H1D06_07865) - 1557358..1559712 (+) 2355 Protein_1503 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12092.39 Da        Isoelectric Point: 10.1503

>NTDB_id=468611 H1D06_RS07835 WP_240017638.1 1555893..1556231(+) (comEA/comE1) [Mannheimia haemolytica strain 0760]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVXKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468611 H1D06_RS07835 WP_240017638.1 1555893..1556231(+) (comEA/comE1) [Mannheimia haemolytica strain 0760]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGANAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.522

100

0.58
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411
  comE1/comEA Haemophilus influenzae Rd KW20

50.549

81.25

0.411