Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H1D06_RS06485 Genome accession   NZ_CP059324
Coordinates   1322252..1323397 (+) Length   381 a.a.
NCBI ID   WP_240017520.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0760     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1317252..1328397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D06_RS06460 (H1D06_06460) matP 1317735..1318181 (-) 447 WP_240017517.1 macrodomain Ter protein MatP -
  H1D06_RS06465 (H1D06_06465) - 1318274..1319911 (+) 1638 WP_240017518.1 AAA family ATPase -
  H1D06_RS06470 (H1D06_06470) fabA 1320025..1320555 (+) 531 WP_240017519.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  H1D06_RS06475 (H1D06_06475) rfaD 1320631..1321557 (-) 927 WP_006248766.1 ADP-glyceromanno-heptose 6-epimerase -
  H1D06_RS06480 (H1D06_06480) def 1321651..1322163 (-) 513 WP_006248765.1 peptide deformylase -
  H1D06_RS06485 (H1D06_06485) dprA 1322252..1323397 (+) 1146 WP_240017520.1 DNA-processing protein DprA Machinery gene
  H1D06_RS06490 (H1D06_06490) - 1323493..1324848 (-) 1356 WP_240017521.1 PTS ascorbate transporter subunit IIC -
  H1D06_RS06495 (H1D06_06495) - 1324861..1325130 (-) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  H1D06_RS06500 (H1D06_06500) - 1325361..1326386 (+) 1026 WP_240017522.1 LacI family DNA-binding transcriptional regulator -
  H1D06_RS06505 (H1D06_06505) secE 1326499..1326912 (+) 414 WP_006248761.1 preprotein translocase subunit SecE -
  H1D06_RS06510 (H1D06_06510) nusG 1326914..1327477 (+) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  H1D06_RS06515 (H1D06_06515) rplK 1327757..1328137 (+) 381 WP_240017523.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42207.14 Da        Isoelectric Point: 5.2420

>NTDB_id=468610 H1D06_RS06485 WP_240017520.1 1322252..1323397(+) (dprA) [Mannheimia haemolytica strain 0760]
MAYQYDLLRLLQVQIGPQRIGRLLAELDFAEFCAYDKTQLRQIGWNEKQIQRWFNPDKNWIEQALTWAEQPNQQILSLFD
KAYPFLLRQISTAPPILFVKGNVESLSLPQIAIVGSRDYSPYGEYWAGQFAADLVKHNMAVTSGLAIGIDGFAHKKVVEY
QGITIAVLGSGLNRIYPARHQKLAEQIVESGGALVSEFSPNQPPIAENFPRRNRIISGLSLGTLVIEATINSGSLITARY
ALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVXGVEDILEAVASQYQPQQIPLFDEPKPIVSTSLQAVKSSEKFAKNP
PNLTACQQQIYQHISLEPIAIDDLARATELTIETLLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=468610 H1D06_RS06485 WP_240017520.1 1322252..1323397(+) (dprA) [Mannheimia haemolytica strain 0760]
ATGGCATATCAGTATGATTTATTGCGTTTGTTGCAGGTGCAAATTGGTCCGCAGCGAATCGGACGGTTATTGGCAGAGTT
GGATTTTGCCGAATTTTGTGCCTACGATAAAACACAGTTAAGGCAGATCGGCTGGAATGAAAAGCAGATTCAGCGTTGGT
TTAATCCGGATAAAAATTGGATTGAGCAGGCACTAACTTGGGCGGAGCAGCCGAATCAGCAAATCCTGAGTTTATTTGAT
AAAGCTTATCCTTTCTTGCTGCGGCAAATTTCCACCGCTCCGCCGATTTTATTTGTAAAGGGTAATGTCGAAAGCCTTTC
CTTACCGCAAATTGCGATTGTTGGGAGTCGGGATTATTCGCCCTACGGTGAATATTGGGCGGGGCAATTTGCCGCTGACT
TGGTGAAGCACAATATGGCGGTGACTAGCGGTTTAGCGATTGGCATTGACGGTTTTGCACATAAAAAAGTAGTGGAATAT
CAAGGTATTACGATTGCTGTGTTGGGCAGTGGCTTAAACCGGATTTACCCCGCACGCCATCAAAAACTGGCTGAACAAAT
TGTCGAGTCAGGTGGTGCGTTGGTGTCTGAATTTTCACCTAATCAGCCTCCGATTGCTGAAAATTTCCCACGCCGAAACC
GCATAATCAGCGGTTTATCGCTCGGCACTTTGGTGATTGAAGCAACCATTAATAGTGGCTCTTTAATTACCGCTCGCTAT
GCCCTTGAACAAGGTCGGGAGGTGTTTGCGTTACCGAATGCGGTGCAAAACCCTTACGCACAAGGTTGCCACAAGCTAAT
TAAAGAAGGGGCGTTGCTTGTGGANGGGGTGGAAGATATTTTAGAGGCGGTCGCCTCTCAATATCAACCTCAACAAATCC
CTTTGTTTGATGAGCCTAAGCCAATAGTAAGCACATCTTTACAAGCGGTCAAAAGTAGCGAAAAATTTGCAAAAAATCCG
CCAAATCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCTATAGCGATTGACGATTTAGCCAGAGC
TACAGAGTTAACGATTGAGACATTGCTAGTTGAATTACTGGGGCTGGAATTAGCCGGCGTAATTAAACAAGTGAGTGGGG
GGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(316-374)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.016

100

0.74
  dprA Haemophilus influenzae Rd KW20

50.729

90.026

0.457
  dprA Vibrio campbellii strain DS40M4

45.355

96.063

0.436
  dprA Vibrio cholerae strain A1552

42.033

95.538

0.402
  dprA Legionella pneumophila strain ERS1305867

41.279

90.289

0.373