Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H1D07_RS01910 Genome accession   NZ_CP059323
Coordinates   372494..373807 (-) Length   437 a.a.
NCBI ID   WP_006252205.1    Uniprot ID   A0A378NH42
Organism   Mannheimia haemolytica strain 0768     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367494..378807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D07_RS01880 (H1D07_01885) ruvB 367993..368997 (-) 1005 WP_006252203.1 Holliday junction branch migration DNA helicase RuvB -
  H1D07_RS01885 (H1D07_01890) ruvA 369134..369739 (-) 606 WP_006252204.1 Holliday junction branch migration protein RuvA -
  H1D07_RS01890 (H1D07_01895) - 369850..370473 (-) 624 WP_240027024.1 LysE family transporter -
  H1D07_RS01895 (H1D07_01900) - 370480..370953 (-) 474 WP_240018882.1 phosphatidylglycerophosphatase A -
  H1D07_RS01900 (H1D07_01905) thiL 370958..371938 (-) 981 WP_006247939.1 thiamine-phosphate kinase -
  H1D07_RS01905 (H1D07_01910) nusB 372001..372414 (-) 414 WP_006247938.1 transcription antitermination factor NusB -
  H1D07_RS01910 (H1D07_01915) comE 372494..373807 (-) 1314 WP_006252205.1 type IV pilus secretin PilQ Machinery gene
  H1D07_RS01915 (H1D07_01920) - 373816..374229 (-) 414 WP_006247936.1 hypothetical protein -
  H1D07_RS01920 (H1D07_01925) - 374232..374768 (-) 537 WP_006247935.1 hypothetical protein -
  H1D07_RS01925 - 375112..375288 (-) 177 WP_240020006.1 hypothetical protein -
  H1D07_RS01930 (H1D07_01935) - 375264..375965 (-) 702 WP_240027025.1 competence protein ComA -
  H1D07_RS01935 (H1D07_01940) - 376089..378653 (+) 2565 WP_240027026.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 48468.47 Da        Isoelectric Point: 7.5799

>NTDB_id=468581 H1D07_RS01910 WP_006252205.1 372494..373807(-) (comE) [Mannheimia haemolytica strain 0768]
MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNMVLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQ
EDDIVYIHKKEEKAADLTPLPIMNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNDVTNNLNVN
FPITGGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLG
LEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIK
RLFSQTRDKISKRELVIFVTPYILQSNEKSSNHKKSK

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=468581 H1D07_RS01910 WP_006252205.1 372494..373807(-) (comE) [Mannheimia haemolytica strain 0768]
ATGTGGCGAATTTTTATATATTTCTTATGCGGTTTTTCATTAGCCTATGCGAATACCATTTCCATAGTTTTAAAAAATGC
TCCAACTTCGCTTATTTTTACTTATTTAGCGGAAGAAACCGGTAAAAATATGGTGCTTGATGATAATATTGAAACCAAAT
CAACACTACGATTAGAAAATAAATCGGTTGACGAGATTTTTAAAACGCTTGGCAAAGTCAATAAATTATCCTTAACGCAA
GAAGATGATATTGTTTATATTCACAAAAAAGAGGAAAAAGCGGCTGACTTAACGCCTCTGCCAATAATGAATTTGCAAAA
TAATGGGCAAAATACACCGCTTGTCACCGCCCCTAAGTTAATCACAAAAACCTTGAAACTACATTATGCAAAGGCTTCAG
AGGTGATTGAGTCGTTAACCAAAGGCAGCGGAACGTTTTTATCGGAAAACGGTTATATTCACTTTGATGAAAGAAGCAAT
AGCCTGATTGTGAAAGACAGTGCAAAATCGCTTAAAAATATCGAGAATTTAGTAAAACAGCTCGACCAACCCACCGAGCA
AATTGCGATTGAGGCTAGAATTGTCACTATCAGTAGCGAGCATTTGCAAGAGCTTGGCGTTCGCTGGGGAATTTTTTCTC
GTGGGGCTGGGCACTATAAATTTGGCGGACGGCTGGAAGGCAATGGACTCAACGATGTCACCAATAACTTAAATGTAAAT
TTTCCGATTACTGGTGGAGCATCTGCCGTATTACAGGTTGCGTCCATTAATAGCAGAGTGCTTGATTTAGAATTAAGTGC
ATTAGAACAAGAAAATAGTGTGGAAATTATTGCCAGCCCACGCCTGTTAACCACCAATAAAAAGCCGGCAAGTATCAAGC
AAGGCACGGAAATTCCTTATGTGATGTACAACACCAAATCGGAAGCCACCGATGTCGAATTTAAAGAAGCGGTATTAGGG
CTTGAAGTCGTTCCACACCTTTCAACCCAAAATCAAATTCTACTCGATCTGATCGTTACCCAAAATTCGCCAAATTCCCA
ATCCGGCAGTAGTGGCTTAATTACGATTGATAAACAAGAGCTAAATACGCAAGTATTTGCCAAACACGGCGAAACCATTG
TACTTGGTGGTATTTTTCAACATTTAACCCAAAAAGGCGAAGATAAAGTGCCGATTTTAGGCTCAATTCCCTTCATCAAG
CGGTTATTTAGTCAAACTCGAGATAAAATCAGCAAAAGAGAGCTAGTCATTTTTGTGACGCCTTATATCCTTCAATCTAA
TGAAAAGAGCAGCAACCACAAAAAATCAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(267-424)

Bacterial type II/III secretion system short domain (Secretin_N)

(122-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378NH42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

63.073

99.771

0.629
  comE Haemophilus influenzae Rd KW20

51.034

99.542

0.508
  comE Haemophilus influenzae 86-028NP

50.345

99.542

0.501
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.192

96.339

0.378
  pilQ Vibrio cholerae strain A1552

39.192

96.339

0.378
  pilQ Vibrio campbellii strain DS40M4

37.355

98.627

0.368