Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H1D07_RS00025 Genome accession   NZ_CP059323
Coordinates   3866..4204 (+) Length   112 a.a.
NCBI ID   WP_006251644.1    Uniprot ID   A0A248ZWT2
Organism   Mannheimia haemolytica strain 0768     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..9204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D07_RS00010 (H1D07_00010) waaF 677..1714 (-) 1038 WP_240026933.1 lipopolysaccharide heptosyltransferase II -
  H1D07_RS00015 (H1D07_00015) - 1824..2240 (-) 417 WP_240026934.1 MliC family protein -
  H1D07_RS00020 (H1D07_00020) - 2300..3574 (-) 1275 WP_240026935.1 LysM-like peptidoglycan-binding domain-containing protein -
  H1D07_RS00025 (H1D07_00025) comEA/comE1 3866..4204 (+) 339 WP_006251644.1 ComEA family DNA-binding protein Machinery gene
  H1D07_RS00030 (H1D07_00030) asd 4367..5260 (+) 894 WP_240026936.1 archaetidylserine decarboxylase -
  H1D07_RS12920 (H1D07_00035) - 5332..7683 (+) 2352 Protein_6 DEAD/DEAH box helicase family protein -
  H1D07_RS00045 (H1D07_00040) - 7731..9203 (+) 1473 WP_240026937.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12111.91 Da        Isoelectric Point: 10.0993

>NTDB_id=468575 H1D07_RS00025 WP_006251644.1 3866..4204(+) (comEA/comE1) [Mannheimia haemolytica strain 0768]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468575 H1D07_RS00025 WP_006251644.1 3866..4204(+) (comEA/comE1) [Mannheimia haemolytica strain 0768]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248ZWT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.292

100

0.598
  comE1/comEA Haemophilus influenzae Rd KW20

52.747

81.25

0.429
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42