Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZY77_RS08885 Genome accession   NZ_CP059257
Coordinates   1801845..1802330 (-) Length   161 a.a.
NCBI ID   WP_296636255.1    Uniprot ID   -
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1796845..1807330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS08870 (HZY77_08835) - 1798646..1799248 (-) 603 WP_296813943.1 DUF502 domain-containing protein -
  HZY77_RS08875 (HZY77_08840) - 1799318..1799578 (-) 261 WP_296813946.1 FmdB family zinc ribbon protein -
  HZY77_RS08880 (HZY77_08845) - 1799695..1801659 (-) 1965 WP_296813947.1 TonB-dependent receptor -
  HZY77_RS08885 (HZY77_08850) ssb 1801845..1802330 (-) 486 WP_296636255.1 single-stranded DNA-binding protein Machinery gene
  HZY77_RS08890 (HZY77_08855) - 1802384..1803745 (-) 1362 WP_296813949.1 MFS transporter -
  HZY77_RS08895 (HZY77_08860) uvrA 1803859..1806681 (+) 2823 WP_296813951.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17538.58 Da        Isoelectric Point: 5.9440

>NTDB_id=468176 HZY77_RS08885 WP_296636255.1 1801845..1802330(-) (ssb) [MAG: Thiobacillus sp. isolate SSC5]
MASVNKVILVGNLGRDPEMRYLPSGEAVANLAIATTDKYKDKTGQMVEQTEWHRVSFFGRTAEVCGQYLKKGSQVYVEGS
IRTRKYTDKEGIEKYATEIRGDRMQMLGGRSGGGMADMDDGSYNQAAPASAPRSQPRSSAPAAAQRPASSGFDDMDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=468176 HZY77_RS08885 WP_296636255.1 1801845..1802330(-) (ssb) [MAG: Thiobacillus sp. isolate SSC5]
ATGGCATCCGTCAATAAAGTGATTCTGGTCGGCAACCTTGGGCGCGATCCCGAAATGCGCTACCTGCCGAGCGGAGAGGC
TGTCGCCAACCTTGCCATCGCCACCACCGACAAATATAAGGACAAAACCGGTCAGATGGTCGAGCAGACCGAATGGCACC
GGGTCAGCTTCTTTGGGCGTACCGCCGAAGTGTGTGGGCAATACCTGAAGAAGGGCAGCCAGGTCTACGTCGAGGGCAGC
ATCCGCACCCGCAAGTACACCGACAAGGAAGGCATCGAGAAATACGCCACCGAAATTCGCGGCGACCGCATGCAGATGCT
GGGCGGACGCAGTGGCGGTGGGATGGCCGACATGGACGACGGTTCCTACAATCAGGCAGCACCCGCAAGCGCCCCGCGCA
GCCAGCCGCGCAGCAGTGCGCCTGCCGCCGCGCAGCGTCCGGCCAGTAGTGGCTTTGACGACATGGACGACGATATTCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.547
  ssb Neisseria meningitidis MC58

48.851

100

0.528
  ssb Neisseria gonorrhoeae MS11

48.851

100

0.528
  ssb Vibrio cholerae strain A1552

48.023

100

0.528