Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS074_RS04115 Genome accession   NZ_CP059245
Coordinates   804317..805465 (-) Length   382 a.a.
NCBI ID   WP_409038693.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0740     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 799317..810465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS074_RS04085 (HS074_04050) rplK 799579..800010 (-) 432 WP_409038691.1 50S ribosomal protein L11 -
  HS074_RS04090 (HS074_04055) nusG 800241..800804 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS074_RS04095 (HS074_04060) secE 800806..801219 (-) 414 WP_240028290.1 preprotein translocase subunit SecE -
  HS074_RS04100 (HS074_04065) - 801332..802357 (-) 1026 WP_240020341.1 LacI family DNA-binding transcriptional regulator -
  HS074_RS04105 (HS074_04070) - 802588..802857 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS074_RS04110 (HS074_04075) - 802870..804222 (+) 1353 WP_409038692.1 PTS ascorbate transporter subunit IIC -
  HS074_RS04115 (HS074_04080) dprA 804317..805465 (-) 1149 WP_409038693.1 DNA-processing protein DprA Machinery gene
  HS074_RS04120 (HS074_04085) def 805553..806065 (+) 513 WP_006248765.1 peptide deformylase -
  HS074_RS04125 (HS074_04090) rfaD 806159..807088 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS074_RS04130 (HS074_04095) fabA 807155..807685 (-) 531 WP_240028514.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS074_RS04135 (HS074_04100) - 807798..809435 (-) 1638 WP_409038694.1 AAA family ATPase -
  HS074_RS04140 (HS074_04105) matP 809528..809977 (+) 450 WP_409038111.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42541.09 Da        Isoelectric Point: 4.9609

>NTDB_id=468143 HS074_RS04115 WP_409038693.1 804317..805465(-) (dprA) [Mannheimia haemolytica strain 0740]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQXIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAXN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGXYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=468143 HS074_RS04115 WP_409038693.1 804317..805465(-) (dprA) [Mannheimia haemolytica strain 0740]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAANAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCANAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGNGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-374)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.087

99.215

0.725
  dprA Haemophilus influenzae Rd KW20

51.304

90.314

0.463
  dprA Vibrio campbellii strain DS40M4

44.474

97.12

0.432
  dprA Vibrio cholerae strain A1552

42.318

97.12

0.411
  dprA Legionella pneumophila strain ERS1305867

40.058

90.838

0.364