Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS074_RS02755 Genome accession   NZ_CP059245
Coordinates   531864..532205 (+) Length   113 a.a.
NCBI ID   WP_409038628.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0740     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526864..537205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS074_RS02730 (HS074_02710) rpsL 527085..527459 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  HS074_RS02735 (HS074_02715) rfaC 527581..528540 (-) 960 WP_409038626.1 lipopolysaccharide heptosyltransferase RfaC -
  HS074_RS02740 (HS074_02720) waaF 528606..529646 (-) 1041 WP_409038044.1 lipopolysaccharide heptosyltransferase II -
  HS074_RS02745 (HS074_02725) - 529758..530174 (-) 417 WP_409037003.1 MliC family protein -
  HS074_RS02750 (HS074_02730) - 530238..531572 (-) 1335 WP_409038627.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS074_RS02755 (HS074_02735) comEA/comE1 531864..532205 (+) 342 WP_409038628.1 ComEA family DNA-binding protein Machinery gene
  HS074_RS02760 (HS074_02740) asd 532368..533261 (+) 894 WP_409038629.1 archaetidylserine decarboxylase -
  HS074_RS02765 (HS074_02745) hsdR 533333..535684 (+) 2352 WP_409038630.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS074_RS02770 (HS074_02750) - 535732..537204 (+) 1473 WP_409038048.1 N-6 DNA methylase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12230.80 Da        Isoelectric Point: 10.0993

>NTDB_id=468140 HS074_RS02755 WP_409038628.1 531864..532205(+) (comEA/comE1) [Mannheimia haemolytica strain 0740]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=468140 HS074_RS02755 WP_409038628.1 531864..532205(+) (comEA/comE1) [Mannheimia haemolytica strain 0740]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTNNTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

100

0.593
  comE1/comEA Haemophilus influenzae Rd KW20

52.174

81.416

0.425
  comEA Vibrio cholerae C6706

54.023

76.991

0.416
  comEA Vibrio cholerae strain A1552

54.023

76.991

0.416