Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS054_RS05715 Genome accession   NZ_CP059244
Coordinates   1139925..1140263 (-) Length   112 a.a.
NCBI ID   WP_409043329.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0001     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1134925..1145263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS054_RS05700 (HS054_05655) - 1134925..1136394 (-) 1470 WP_240024991.1 class I SAM-dependent DNA methyltransferase -
  HS054_RS05705 (HS054_05660) hsdR 1136442..1138793 (-) 2352 WP_409043328.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS054_RS05710 (HS054_05665) asd 1138865..1139761 (-) 897 WP_409039239.1 archaetidylserine decarboxylase -
  HS054_RS05715 (HS054_05670) comEA/comE1 1139925..1140263 (-) 339 WP_409043329.1 ComEA family DNA-binding protein Machinery gene
  HS054_RS05720 (HS054_05675) - 1140556..1141887 (+) 1332 WP_409042098.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS054_RS05725 (HS054_05680) - 1141951..1142367 (+) 417 WP_240024996.1 MliC family protein -
  HS054_RS05730 (HS054_05685) waaF 1142479..1143516 (+) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  HS054_RS05735 (HS054_05690) rfaC 1143581..1144540 (+) 960 WP_409043330.1 lipopolysaccharide heptosyltransferase RfaC -
  HS054_RS05740 (HS054_05695) rpsL 1144661..1145035 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12102.62 Da        Isoelectric Point: 9.7700

>NTDB_id=468122 HS054_RS05715 WP_409043329.1 1139925..1140263(-) (comEA/comE1) [Mannheimia haemolytica strain 0001]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEXNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468122 HS054_RS05715 WP_409043329.1 1139925..1140263(-) (comEA/comE1) [Mannheimia haemolytica strain 0001]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAANAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.407

100

0.589
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42
  comE1/comEA Haemophilus influenzae Rd KW20

51.648

81.25

0.42