Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS054_RS04350 Genome accession   NZ_CP059244
Coordinates   866793..867944 (+) Length   383 a.a.
NCBI ID   WP_409043226.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 861793..872944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS054_RS04325 (HS054_04300) matP 862281..862727 (-) 447 Protein_834 macrodomain Ter protein MatP -
  HS054_RS04330 (HS054_04305) - 862820..864457 (+) 1638 WP_006248768.1 AAA family ATPase -
  HS054_RS04335 (HS054_04310) fabA 864570..865100 (+) 531 WP_240017519.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS054_RS04340 (HS054_04315) rfaD 865168..866097 (-) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS054_RS04345 (HS054_04320) def 866191..866703 (-) 513 WP_006248765.1 peptide deformylase -
  HS054_RS04350 (HS054_04325) dprA 866793..867944 (+) 1152 WP_409043226.1 DNA-processing protein DprA Machinery gene
  HS054_RS04355 (HS054_04330) - 868039..869394 (-) 1356 WP_409043228.1 PTS ascorbate transporter subunit IIC -
  HS054_RS04360 (HS054_04335) - 869407..869676 (-) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS054_RS04365 (HS054_04340) - 869907..870932 (+) 1026 WP_409042397.1 LacI family DNA-binding transcriptional regulator -
  HS054_RS04370 (HS054_04345) secE 871045..871461 (+) 417 WP_409043229.1 preprotein translocase subunit SecE -
  HS054_RS04375 (HS054_04350) nusG 871463..872026 (+) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS054_RS04380 (HS054_04355) rplK 872259..872687 (+) 429 WP_006248758.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 42607.47 Da        Isoelectric Point: 5.2272

>NTDB_id=468119 HS054_RS04350 WP_409043226.1 866793..867944(+) (dprA) [Mannheimia haemolytica strain 0001]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNXPDQKWIDQAMTWSELPNQQIVTL
FDENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHXKIV
MEQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITA
RYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAK
NLPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=468119 HS054_RS04350 WP_409043226.1 866793..867944(+) (dprA) [Mannheimia haemolytica strain 0001]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATNNCCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTC
TTTGATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAG
CCTTTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTG
CCGAATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCANAAAATCGTT
ATGGAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGA
ACAAATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTC
GTAATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCT
CGTTATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAA
GCTAATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGC
AAATCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCAAAA
AATCTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGC
CAAAGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGA
GTGGGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-376)

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.158

99.217

0.726
  dprA Haemophilus influenzae Rd KW20

50.867

90.339

0.46
  dprA Vibrio campbellii strain DS40M4

44.355

97.128

0.431
  dprA Vibrio cholerae strain A1552

42.473

97.128

0.413
  dprA Legionella pneumophila strain ERS1305867

40

90.078

0.36