Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS055_RS03500 Genome accession   NZ_CP059243
Coordinates   676218..676556 (+) Length   112 a.a.
NCBI ID   WP_409040504.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0002     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671218..681556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS055_RS03475 (HS055_03435) rpsL 671447..671821 (-) 375 WP_240026932.1 30S ribosomal protein S12 -
  HS055_RS03480 (HS055_03440) rfaC 671942..672901 (-) 960 WP_240017636.1 lipopolysaccharide heptosyltransferase RfaC -
  HS055_RS03485 (HS055_03445) waaF 672967..674004 (-) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  HS055_RS03490 (HS055_03450) - 674115..674531 (-) 417 WP_409042097.1 MliC family protein -
  HS055_RS03495 (HS055_03455) - 674595..675926 (-) 1332 WP_409042098.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS055_RS03500 (HS055_03460) comEA/comE1 676218..676556 (+) 339 WP_409040504.1 ComEA family DNA-binding protein Machinery gene
  HS055_RS03505 (HS055_03465) asd 676719..677615 (+) 897 WP_409037005.1 archaetidylserine decarboxylase -
  HS055_RS03510 (HS055_03470) hsdR 677687..680041 (+) 2355 WP_409039958.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12139.96 Da        Isoelectric Point: 10.0993

>NTDB_id=468094 HS055_RS03500 WP_409040504.1 676218..676556(+) (comEA/comE1) [Mannheimia haemolytica strain 0002]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLVEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468094 HS055_RS03500 WP_409040504.1 676218..676556(+) (comEA/comE1) [Mannheimia haemolytica strain 0002]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGTTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.292

100

0.598
  comE1/comEA Haemophilus influenzae Rd KW20

52.747

81.25

0.429
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42